View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_33 (Length: 242)
Name: NF14285_low_33
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_33 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 18010742 - 18010545
Alignment:
| Q |
27 |
aagaagggcctaataaaggtttattttatgtggcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaagatcaattggatat |
126 |
Q |
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| T |
18010742 |
aagaagggcctaataaaggtttattttatgtggcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaaaatcaattggatat |
18010643 |
T |
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| Q |
127 |
aagattgttgatgaatggaggccttggttagtcaatgatcaaattgcagggtacttcttcagctattccttcattttactatcccatataatgaactt |
224 |
Q |
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| T |
18010642 |
aagattgttgatgaatggaggccttggttaaccaatgatcaaattgctgggtacttcttcagctattccttctttttattatcccatataatgaactt |
18010545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 18019177 - 18019055
Alignment:
| Q |
57 |
tggcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaagatcaattggatataagattgttgatgaatggaggccttggtta |
156 |
Q |
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| T |
18019177 |
tggcagtggtgatcatgatatgtgtgtcccatttactggaacagaagcatggacaagatcagttggatataaaattattgatccatggaggccctggtta |
18019078 |
T |
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| Q |
157 |
gtcaatgatcaaattgcagggta |
179 |
Q |
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| T |
18019077 |
atcaacaatcaaattgctgggta |
18019055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 30482886 - 30482796
Alignment:
| Q |
57 |
tggcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaagatcaattggatataagattgttgatgaatggagg |
147 |
Q |
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| T |
30482886 |
tggcagtggtgatcatgatatgtgtgtaccatttactggaagtgaggcttggaccagatctttgggatacaaggttgtggatgagtggagg |
30482796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 3022643 - 3022520
Alignment:
| Q |
59 |
gcagtggtgatcatgacatgtgtgtcccatatactggaactgaagcttggacaagatcaattggatataagattgttgatgaatggaggccttggttagt |
158 |
Q |
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| T |
3022643 |
gcagtggtgatcatgacatgtgtgttccatttactgggagtcaagcatggacgagatcaattggatacaagattgttgatgaatggaggccatggttatc |
3022544 |
T |
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| Q |
159 |
caatgatcaaattgcagggtactt |
182 |
Q |
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| T |
3022543 |
caatggtcaagttgttgggtactt |
3022520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 145123 - 145225
Alignment:
| Q |
70 |
catgacatgtgtgtcccatatactggaactgaagcttggacaagatcaattggatataagattgttgatgaatggaggccttggttagtcaatgatcaaa |
169 |
Q |
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|||||||||||||| |||| ||| || | |||| ||||||||||||||||||| || |||||||||||||||||||| |||||| ||||| ||||| |
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| T |
145123 |
catgacatgtgtgttccatttacggggtgtcaagcacggacaagatcaattggatacaatattgttgatgaatggaggccatggttatccaatggtcaaa |
145222 |
T |
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| Q |
170 |
ttg |
172 |
Q |
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||| |
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| T |
145223 |
ttg |
145225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 144570 - 144515
Alignment:
| Q |
101 |
aagcttggacaagatcaattggatataagattgttgatgaatggaggccttggtta |
156 |
Q |
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| T |
144570 |
aagcgtggacaagatcaattgaatacaagatttttgatgaatagaggccatggtta |
144515 |
T |
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