View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14285_low_39 (Length: 227)

Name: NF14285_low_39
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14285_low_39
NF14285_low_39
[»] chr3 (17 HSPs)
chr3 (54-220)||(30077197-30077361)
chr3 (66-227)||(30079338-30079501)
chr3 (79-225)||(30171511-30171655)
chr3 (49-165)||(30130664-30130780)
chr3 (49-165)||(30133988-30134104)
chr3 (49-165)||(30135384-30135500)
chr3 (49-165)||(30144935-30145051)
chr3 (163-227)||(30055734-30055798)
chr3 (130-220)||(30062447-30062537)
chr3 (81-165)||(30141545-30141629)
chr3 (54-144)||(30049115-30049204)
chr3 (166-220)||(30135648-30135702)
chr3 (166-220)||(30141777-30141831)
chr3 (166-220)||(30145199-30145253)
chr3 (160-213)||(30072052-30072105)
chr3 (166-225)||(30172820-30172879)
chr3 (191-226)||(30463197-30463232)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 30077197 - 30077361
Alignment:
Q  54 tgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaatttccacg 153  Q
    ||||| ||||||||||| |||||||||||| |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||  |    
T  30077197 tgtactcttcttttgaattataatgaaatgataatgagattaa-ttgttcaaattttgattaatcaatt-acctcattgtctaattgtgcagtttccttg 30077294  T
Q  154 attacttgaaaaaacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaa 220  Q
    |||||| |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  30077295 attactagaaaaaacatatattaattaaacaacaggcctaacacaagcataagaaatgctgatgaaa 30077361  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 30079338 - 30079501
Alignment:
Q  66 ttgaaatataatgaaatggtaatgagattcagttgttcaaattttga---ttcatcaatttacctcattgtctaattgtgcaatttccacgattacttga 162  Q
    ||||| ||||||||||||||||||| ||||| ||||| |||||||||   ||||||||||  |||  |||||||||||||||||||||  ||||||||||    
T  30079338 ttgaattataatgaaatggtaatgaaattcaattgtttaaattttgagtcttcatcaattaccctg-ttgtctaattgtgcaatttccttgattacttga 30079436  T
Q  163 aaaaacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaaagcaaac 227  Q
    |||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||    
T  30079437 aaaaacatatattaattaaacaacaggcctaacaaaggcataagaaatgctggtgaaaggcaaac 30079501  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 30171511 - 30171655
Alignment:
Q  79 aaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaatttccacgattacttgaaaaaacatatattaat 178  Q
    |||||||||||||||||| | ||||||||||||||||||||||| |||||  || |||||||||||||||||  |||||||  |||| |||||||||| |    
T  30171511 aaatggtaatgagattcaatagttcaaattttgattcatcaatt-acctcgatgcctaattgtgcaatttccttgattactataaaa-acatatattagt 30171608  T
Q  179 taaaaaacaggcctaacaaaagcataagacatgctgatgaaaagcaa 225  Q
    |||| |||||||||||||||||||||| |||||||||||||| ||||    
T  30171609 taaacaacaggcctaacaaaagcataacacatgctgatgaaaggcaa 30171655  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30130664 - 30130780
Alignment:
Q  49 tatcctgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaattt 148  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  30130664 tatcttgtactcttcttttgaattataatgaaatggtaatgagattcaattgttcaaattttgattcatcaatttacctcatcgtataattgtacaattt 30130763  T
Q  149 ccacgattacttgaaaa 165  Q
     |  |||||||||||||    
T  30130764 tcttgattacttgaaaa 30130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30133988 - 30134104
Alignment:
Q  49 tatcctgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaattt 148  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  30133988 tatcttgtactcttcttttgaattataatgaaatggtaatgagattcaattgttcaaattttgattcatcaatttacctcattgtattattgtacaattt 30134087  T
Q  149 ccacgattacttgaaaa 165  Q
     |  |||||||||||||    
T  30134088 tcttgattacttgaaaa 30134104  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30135384 - 30135500
Alignment:
Q  49 tatcctgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaattt 148  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  30135384 tatcttgtactcttcttttgaattataatgaaatggtaatgagattcaattgttcaaattttgattcatcaatttacctcattgtattattgtacaattt 30135483  T
Q  149 ccacgattacttgaaaa 165  Q
     |  |||||||||||||    
T  30135484 tcttgattacttgaaaa 30135500  T

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Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30144935 - 30145051
Alignment:
Q  49 tatcctgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaattt 148  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  30144935 tatcttgtactcttcttttgaattataatgaaatggtaatgagattcaattgttcaaattttgattcatcaatttacctcattgtattattgtacaattt 30145034  T
Q  149 ccacgattacttgaaaa 165  Q
     |  |||||||||||||    
T  30145035 tcttgattacttgaaaa 30145051  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 30055734 - 30055798
Alignment:
Q  163 aaaaacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaaagcaaac 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30055734 aaaaacatatattaattaaacaacaggcctaacaaaagcataagacatgctgatgaaaagcaaac 30055798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 30062447 - 30062537
Alignment:
Q  130 ttgtctaattgtgcaatttccacgattacttgaaaaaacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaa 220  Q
    |||| ||||||||||||||||  ||||||||||||||| |||||||| ||||| |||| ||||| ||||||||||||||||||||||||||    
T  30062447 ttgtataattgtgcaatttccttgattacttgaaaaaatatatattagttaaacaacaagcctatcaaaagcataagacatgctgatgaaa 30062537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 30141545 - 30141629
Alignment:
Q  81 atggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgcaatttccacgattacttgaaaa 165  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| |||||| |  |||||||||||||    
T  30141545 atggtaatgagattcaattgttcaaattttgattcatcaatttacctcattgtattattgtacaattttcttgattacttgaaaa 30141629  T

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Target: chr3; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 30049115 - 30049204
Alignment:
Q  54 tgtacgcttcttttgaaatataatgaaatggtaatgagattcagttgttcaaattttgattcatcaatttacctcattgtctaattgtgca 144  Q
    ||||| |||||||| || |||||||| |||||||| ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  30049115 tgtactcttcttttaaattataatgagatggtaataagattcaattgttcagattttgattcatcaa-ttacctcattgtctaattgtgca 30049204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 30135648 - 30135702
Alignment:
Q  166 aacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaa 220  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30135648 aacatatattaattaaacaacaggcctaacaaaagcataagatatgctgatgaaa 30135702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 30141777 - 30141831
Alignment:
Q  166 aacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaa 220  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30141777 aacatatattaattaaacaacaggcctaacaaaagcataagatatgctgatgaaa 30141831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 30145199 - 30145253
Alignment:
Q  166 aacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaa 220  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30145199 aacatatattaattaaacaacaggcctaacaaaagcataagatatgctgatgaaa 30145253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 30072052 - 30072105
Alignment:
Q  160 tgaaaaaacatatattaattaaaaaacaggcctaacaaaagcataagacatgct 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  30072052 tgaaaaaacatatattaattaaacaacaggcctaacaaaagcataacacatgct 30072105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 30172820 - 30172879
Alignment:
Q  166 aacatatattaattaaaaaacaggcctaacaaaagcataagacatgctgatgaaaagcaa 225  Q
    ||||||||||||||||| ||||||||||||  |||||||| |||| | ||||||| ||||    
T  30172820 aacatatattaattaaacaacaggcctaacgtaagcataacacataccgatgaaaggcaa 30172879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 30463232 - 30463197
Alignment:
Q  191 ctaacaaaagcataagacatgctgatgaaaagcaaa 226  Q
    |||||||||||||||||||||||||||||| |||||    
T  30463232 ctaacaaaagcataagacatgctgatgaaaggcaaa 30463197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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