View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_4 (Length: 619)
Name: NF14285_low_4
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0702 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 5478411 - 5478672
Alignment:
| Q |
1 |
acgtatttatccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaatcgctaacaatttg |
100 |
Q |
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| T |
5478411 |
acgtatttatccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaagcgctaacaatttg |
5478510 |
T |
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| Q |
101 |
aaaagtttgattcacatgaaatatttacagttgaagttgtagctgagtcccgcattactaagaattttaaggaaggtttatttatgcatgtaggtagttt |
200 |
Q |
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| T |
5478511 |
aaaagtttgattcacatgaaatatttacagttgaagttgtagcagagtcccgcattactaagaatttt-agtaagg----tttatgcatgtaggtagttt |
5478605 |
T |
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| Q |
201 |
ttgaaagtaagattcaagttgttaacatttggtagaccctagtaaactctaggaatcagtagtggta |
267 |
Q |
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| T |
5478606 |
ttgaaagtaagattcaagttgttaacatttggtagaccctagtaaactctaggaatcagtagtggta |
5478672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 455 - 600
Target Start/End: Original strand, 5478862 - 5479005
Alignment:
| Q |
455 |
aatggaggctcttgcatttataacataaaacgatttccacattccaaacttatgggaatagagtgttaattatctgtactctgctttgaaaacaggggaa |
554 |
Q |
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| T |
5478862 |
aatggaggctcttgcatttataacataaaacgatttccacattccaaacttatgggaatagagtgttaa-tatctgtactctgctttgaaaacaggggaa |
5478960 |
T |
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| Q |
555 |
agagaagaaaaatgaaagaaaatttgctttgataaataaatgagaa |
600 |
Q |
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| T |
5478961 |
agagaagaaaaatgaaagaaaatttgc-ttgataaataaatgagaa |
5479005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 5478730 - 5478808
Alignment:
| Q |
325 |
agctaatcttgtaggcgagattcaaaatctatcaacttggt-aagaccctaataacctctaggaatctgtatttgtagg |
402 |
Q |
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| T |
5478730 |
agctaatcttgtaggcgagattcaaaatctatcaacttggtgtagaccctaataacctctaggaatctgtatttgtagg |
5478808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 163967 - 163892
Alignment:
| Q |
11 |
ccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaa |
86 |
Q |
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| T |
163967 |
ccacctcggcgaacatttcgtgacattgcccatcgccctacttctatttgtctagatgtgatccaagcgggctcaa |
163892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 18343402 - 18343477
Alignment:
| Q |
11 |
ccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaa |
86 |
Q |
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| T |
18343402 |
ccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaa |
18343477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 7023 - 6989
Alignment:
| Q |
52 |
ttctatttgtctagatgtgatccaagcaggctcaa |
86 |
Q |
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| T |
7023 |
ttctatttgtctagatgtgatccaagcgggctcaa |
6989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 35195108 - 35195074
Alignment:
| Q |
52 |
ttctatttgtctagatgtgatccaagcaggctcaa |
86 |
Q |
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||||||||||||||||||||||||||| ||||||| |
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| T |
35195108 |
ttctatttgtctagatgtgatccaagcgggctcaa |
35195074 |
T |
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