View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14285_low_40 (Length: 225)

Name: NF14285_low_40
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14285_low_40
NF14285_low_40
[»] chr4 (12 HSPs)
chr4 (2-44)||(6592345-6592387)
chr4 (2-56)||(6749786-6749839)
chr4 (1-44)||(6716354-6716397)
chr4 (1-40)||(6793297-6793336)
chr4 (1-56)||(6812660-6812715)
chr4 (1-44)||(6537182-6537225)
chr4 (1-44)||(6625975-6626018)
chr4 (1-45)||(7889801-7889845)
chr4 (5-44)||(6501473-6501512)
chr4 (1-44)||(6833244-6833287)
chr4 (1-55)||(6667071-6667124)
chr4 (1-42)||(10034712-10034753)
[»] scaffold0552 (1 HSPs)
scaffold0552 (1-56)||(132-187)


Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 6592345 - 6592387
Alignment:
Q  2 cctctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6592345 cctctgaaactcaagaacacatcatacatctttggctgaaaca 6592387  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 6749839 - 6749786
Alignment:
Q  2 cctctgaaactcaagaacacatcatacatctttggctgaaacaatcaaaggaaag 56  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  6749839 cctctgaaactcaagaacacatcgtacatctttggctgaaac-atcaaaggaaag 6749786  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6716397 - 6716354
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6716397 ccctctgaaactcaagaacacatcgtacatctttggctgaaaca 6716354  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6793336 - 6793297
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctga 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6793336 ccctctgaaactcaagaacacatcatacatctttggctga 6793297  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6812715 - 6812660
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaacaatcaaaggaaag 56  Q
    |||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  6812715 ccctctaaaactcaagatcacatcgtacatcttcggctgaaacaatcaaaggaaag 6812660  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6537182 - 6537225
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  6537182 ccctctaaaactcaaaaacacatcatacatctttggctgaaaca 6537225  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6625975 - 6626018
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  6625975 ccctctgaaactcaagaacacatcgtacatctttggctaaaaca 6626018  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7889801 - 7889845
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaacaa 45  Q
    ||||||||||||||||||||| || |||||||||| |||||||||    
T  7889801 ccctctgaaactcaagaacacgtcgtacatctttgtctgaaacaa 7889845  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 6501473 - 6501512
Alignment:
Q  5 ctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  6501473 ctgaaactcaagaacacgtcgtacatctttggctgaaaca 6501512  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6833287 - 6833244
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaaca 44  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||    
T  6833287 ccctctgaaactcaagaatacatcgtacacctttggctgaaaca 6833244  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6667124 - 6667071
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaacaatcaaaggaaa 55  Q
    |||||||||||||||||||||||  |||||||| | ||||||| |||||||||||    
T  6667124 ccctctgaaactcaagaacacattgtacatcttcgactgaaac-atcaaaggaaa 6667071  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10034753 - 10034712
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaa 42  Q
    ||||||||||||||||||||| |||| |||||||| ||||||    
T  10034753 ccctctgaaactcaagaacacgtcatgcatctttgcctgaaa 10034712  T

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Target: scaffold0552 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 187 - 132
Alignment:
Q  1 ccctctgaaactcaagaacacatcatacatctttggctgaaacaatcaaaggaaag 56  Q
    |||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  187 ccctctaaaactcaagatcacatcgtacatcttcggctgaaacaatcaaaggaaag 132  T

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