View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_8 (Length: 537)
Name: NF14285_low_8
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 107 - 521
Target Start/End: Original strand, 38942708 - 38943118
Alignment:
| Q |
107 |
ctgttttccttttcaaaaaactttcctgaatctacttctacnnnnnnnnctcaactgaatctacacacacaggaaatggcttcatagtaaaaagaataga |
206 |
Q |
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| T |
38942708 |
ctgttttccttttcaaaaagctttcctgaatctacttgtacctaaaaaactcaactgaatctacacacagaggaaatggcttcagagtaaaaagaataga |
38942807 |
T |
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| Q |
207 |
caatcacaacaacctcaacaattcatactatcacaataatctcatctccctttagttgtacacaatcacttcccgttccaaattaccctgcaattcaatc |
306 |
Q |
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| T |
38942808 |
caatgacaacaacctcaacaattcatactaccacaataatcccacctcc-tttagttgtacacaatcacttcccattccaaattaccctgcaattcaatc |
38942906 |
T |
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| Q |
307 |
aaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcagg |
406 |
Q |
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| T |
38942907 |
aaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcagg |
38943006 |
T |
|
| Q |
407 |
tatatcagtcagctgagcaatggttttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacggggaccaagtatgggaacagtc |
506 |
Q |
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| T |
38943007 |
tatatcagtcagctgagcaatggttttctttg--catacaa-tcgctaaaacacttcatcaaaagacgaacttacacggggagcaagtatgggaacagtc |
38943103 |
T |
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| Q |
507 |
ttggatgtctcaact |
521 |
Q |
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| T |
38943104 |
ttggatgtctcaact |
38943118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 13724013 - 13723893
Alignment:
| Q |
161 |
ctgaatctacacacacaggaaatggcttcatagtaaaaagaatagacaatcacaacaacctcaacaattcatactat--cacaataatctcatctccctt |
258 |
Q |
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| T |
13724013 |
ctgaatctaaaaacacaggaaatggcttcttggaaaaaagcatacacaatgttaacaacctcaatagctcatacaattctacaataatttcatctccttt |
13723914 |
T |
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| Q |
259 |
tagttgtacacaatcacttcc |
279 |
Q |
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| T |
13723913 |
tagctcaacacaatcacttcc |
13723893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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