View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14286_high_3 (Length: 239)
Name: NF14286_high_3
Description: NF14286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14286_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49005579 - 49005358
Alignment:
| Q |
1 |
ccttatgtcttcggtgactcattactgatttacagagaactatagcaaagactccagtataaaccagagtcaaacataattaattcaatgttcactaaca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49005579 |
ccttatgtcttcagtgactcattactgatttacagagaactatagcaaagactccagtataaaccagagtcaaacataattaattcaatgttcactaaca |
49005480 |
T |
|
| Q |
101 |
aagattatttggaaaacctcataaattttcatttaatcagtagacgtttgaaaccctgctactaaaatctcattctcaatatcaaccctttaaaatatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49005479 |
aagattatttggaaaacctcataaattttcatttaatcagtagacgtttgaaaacctgctactaaaatctcattctcaatattaaccctttaaaatatgc |
49005380 |
T |
|
| Q |
201 |
taggctttagcaaagctcaaat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49005379 |
taggctttagcaaagctcaaat |
49005358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 38161484 - 38161375
Alignment:
| Q |
114 |
aaacctcataaattttcatttaatcagtagacgtttgaaaccctgctactaaaatctcattctcaatatcaaccctttaaaatatgctaggctttagcaa |
213 |
Q |
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|||||||||||| ||||||||||||||||||||| |||| | ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38161484 |
aaacctcataaacattcatttaatcagtagacgttggaaaacatgctattaaaatgtcattctcaatatcaaccctttaaaatatgctaggatttagcaa |
38161385 |
T |
|
| Q |
214 |
agctcaaatt |
223 |
Q |
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|||||||||| |
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| T |
38161384 |
agctcaaatt |
38161375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 38117701 - 38117598
Alignment:
| Q |
114 |
aaacctcataaattttcatttaatcagtagacgtttgaaaccctgctactaaaatctcattctcaatatcaaccctttaaaatatgctaggctttagcaa |
213 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||| |||||||||||| || |||||||||||||||| ||||| |||| ||||| |||||| |
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| T |
38117701 |
aaacctcataaattttcacttaatcagtagacgttggaaaacctgctactaaa----ca-tctcaatatcaaccctctaaaaaatgccaggctatagcaa |
38117607 |
T |
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| Q |
214 |
agctcaaat |
222 |
Q |
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||||||||| |
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| T |
38117606 |
agctcaaat |
38117598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 38139913 - 38139821
Alignment:
| Q |
128 |
ttcatttaatcagtagacgtttgaaaccctgctactaaaatctcattctcaatatcaaccctttaaaatatgctaggctttagcaaagctcaaat |
222 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||| |||| | |||||||||||||||||| |
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| T |
38139913 |
ttcatttaatcagtagacgttggaaaacctgctactaaaatctcattctcaatagtaaccctt--aaaaatgcaaatctttagcaaagctcaaat |
38139821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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