View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14286_low_1 (Length: 352)

Name: NF14286_low_1
Description: NF14286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14286_low_1
NF14286_low_1
[»] chr5 (8 HSPs)
chr5 (166-352)||(14891304-14891488)
chr5 (1-148)||(14891163-14891315)
chr5 (236-332)||(14872873-14872969)
chr5 (33-78)||(19182973-19183018)
chr5 (45-92)||(9537032-9537079)
chr5 (1-91)||(8074461-8074558)
chr5 (33-91)||(28591169-28591227)
chr5 (1-69)||(4592893-4592968)
[»] chr7 (6 HSPs)
chr7 (4-91)||(44333149-44333243)
chr7 (1-91)||(48646059-48646156)
chr7 (1-91)||(10899089-10899186)
chr7 (1-91)||(48788688-48788785)
chr7 (30-91)||(35727709-35727770)
chr7 (33-85)||(8374930-8374982)
[»] chr2 (3 HSPs)
chr2 (1-91)||(31091543-31091640)
chr2 (1-91)||(32766255-32766352)
chr2 (30-78)||(7412115-7412163)
[»] chr1 (7 HSPs)
chr1 (33-85)||(5782430-5782482)
chr1 (30-91)||(44019996-44020057)
chr1 (33-91)||(6612429-6612487)
chr1 (33-91)||(32665825-32665883)
chr1 (30-91)||(8975169-8975230)
chr1 (33-89)||(7945609-7945665)
chr1 (1-89)||(32664525-32664611)
[»] chr8 (3 HSPs)
chr8 (33-90)||(33314872-33314929)
chr8 (33-74)||(41754850-41754891)
chr8 (59-91)||(43539115-43539147)
[»] chr3 (1 HSPs)
chr3 (33-91)||(52318372-52318430)
[»] chr4 (2 HSPs)
chr4 (33-82)||(54574444-54574493)
chr4 (33-73)||(42391943-42391983)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 14891304 - 14891488
Alignment:
Q  166 gatccggcccatgaggcaagcaccttcttttctgtctgcgcgtccttcctagttcagtaacattccgagtgagaacacgaaatggcgtcgaactgtagtc 265  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14891304 gatccggcccatgaggcaagcaccttctt--ctgtctgcgcgtccttcctagttcagtaacattctgagtgagaacacgaaatggcgtcgaactgtagtc 14891401  T
Q  266 ggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatctccttcttcttcaaactcctgtaaattcaatt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14891402 ggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatcttcttcttcttcaaactcctgtaaattcaatt 14891488  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14891163 - 14891315
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggacttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt--ctat 95  Q
    ||||||||||||||||||| ||||   | |||||  ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  ||||    
T  14891163 taaagtgataacggaagtgtagagtcagagacttgcatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtgagggaccaaagtgactat 14891262  T
Q  96 ttgcacaattcttgaaagcccgtatttgctgtgggtaaaatgatccgccccat 148  Q
    |||| |||||||||||||||| |||||| ||||||||||| |||||| |||||    
T  14891263 ttgctcaattcttgaaagcccatatttgttgtgggtaaaaagatccggcccat 14891315  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 332
Target Start/End: Original strand, 14872873 - 14872969
Alignment:
Q  236 gagaacacgaaatggcgtcgaactgtagtcggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatctccttcttcttc 332  Q
    ||||||||||||||||||||||||||  | | |||| | ||  |||||||||||||||  | |||||| |||| ||||| |||||||||||||||||    
T  14872873 gagaacacgaaatggcgtcgaactgtgctagaaaatctctcggaatagcttcatcttccgccaaaaccttattttctcgccgatctccttcttcttc 14872969  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 19183018 - 19182973
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagt 78  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||    
T  19183018 tatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagt 19182973  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 9537079 - 9537032
Alignment:
Q  45 agtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagtc 92  Q
    |||||||||  ||||||||||||||||||| |||||||||| ||||||    
T  9537079 agtcagagacctatgtgacagcgaggtgcagagtgagggactaaagtc 9537032  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 8074558 - 8074461
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  |||||||||||||| |||| | | |||||| |||||    
T  8074558 taaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaagt 8074461  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 28591169 - 28591227
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||| |||||||| ||  ||||||||||||||||||| ||| ||||| ||||||    
T  28591169 tatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagt 28591227  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4592968 - 4592893
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgag 69  Q
    ||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||||||||||||||    
T  4592968 taaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacttatgtgacagcgag 4592893  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 44333243 - 44333149
Alignment:
Q  4 agtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||||||||||||   | |||||||    ||||||||||||||||| ||  ||||||||||||||||||| ||| ||||||||||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagt 44333149  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48646156 - 48646059
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||| ||||   ||||||||    ||||||||| |||||||| ||  ||||||||||||||||||| ||| ||||||||||||    
T  48646156 taaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagt 48646059  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 10899089 - 10899186
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||||||   | |||||||    |||||||| || ||||  ||| ||||||||||||||||||| ||| ||||||||||||    
T  10899089 taaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatctatgtgacagcgaggtgcagagtcagggaccaaagt 10899186  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 48788688 - 48788785
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||||||   | |||||||    ||||||| ||||||||| ||  ||||||||||||||||||||||| | ||| ||||||    
T  48788688 taaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaaggatcaaagt 48788785  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 35727770 - 35727709
Alignment:
Q  30 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||| |||||||| ||  ||||||||||||||||||| ||| ||||| ||||||    
T  35727770 ttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagt 35727709  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 8374982 - 8374930
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggac 85  Q
    ||||||||  |||||||||||  ||||||||||||||||||| ||| ||||||    
T  8374982 tatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggac 8374930  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31091543 - 31091640
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||||||||||| ||||||| ||| ||||||||||||    
T  31091543 taaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcagggaccaaagt 31091640  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 32766255 - 32766352
Alignment:
Q  1 taaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||||||||| ||||||||| ||| ||||||||||||    
T  32766255 taaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcagggaccaaagt 32766352  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 7412163 - 7412115
Alignment:
Q  30 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagt 78  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||||    
T  7412163 ttatatttaatcttgagtcagagatctatgtgacaacgaggtacaaagt 7412115  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 5782482 - 5782430
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggac 85  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||| ||||||    
T  5782482 tatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagggac 5782430  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 44020057 - 44019996
Alignment:
Q  30 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||| |||||||||||  | ||||||| |||| |||||||| ||||||||||||    
T  44020057 ttatatttaatcttgagtcagagacttttgtgacaacgagttgcaaagtcagggaccaaagt 44019996  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 6612487 - 6612429
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||||||||||||||| || | | ||||||||||||| ||| |||||| |||||    
T  6612487 tatttaatcatgagtcagagacatttataacagcgaggtgcagagtcagggactaaagt 6612429  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 32665825 - 32665883
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||||||||||||  |||||||||||||| |||| | | |||||| |||||    
T  32665825 tatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagt 32665883  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 8975230 - 8975169
Alignment:
Q  30 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||| |||||||| ||  | ||||||| | ||||||||||| ||||||||||||    
T  8975230 ttatatttaatcttgagtcagggacctttgtgacaacaaggtgcaaagttagggaccaaagt 8975169  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 7945609 - 7945665
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaa 89  Q
    ||||||||| ||||||||  |  ||||||||||||||||||| ||| ||||||||||    
T  7945609 tatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcagggaccaaa 7945665  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32664611 - 32664525
Alignment:
Q  1 taaagtgataacggaagtgcagaggggacttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaa 89  Q
    ||||||||||||||||||||||||   | || ||||||||| ||||||| |||  ||| | ||||||||||||| ||||||| ||||||    
T  32664611 taaagtgataacggaagtgcagagtt-atttgtatttaatcctgagtca-agacctatataacagcgaggtgcagagtgaggaaccaaa 32664525  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 33314929 - 33314872
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaag 90  Q
    ||||||||| |||||||||||  | || |||||||||||||||||| |||||||||||    
T  33314929 tatttaatcttgagtcagagacctttgagacagcgaggtgcaaagtaagggaccaaag 33314872  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 41754850 - 41754891
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgca 74  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  41754850 tatttaatcctgagtcagagatctatgtgacagcgaggtgca 41754891  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 43539147 - 43539115
Alignment:
Q  59 gtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    |||||||||||||||||||| ||||||||||||    
T  43539147 gtgacagcgaggtgcaaagttagggaccaaagt 43539115  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 52318372 - 52318430
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 91  Q
    ||||||||| |||||||| ||| ||||||||||||| ||||| ||| || |||||||||    
T  52318372 tatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagaccaaagt 52318430  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 54574493 - 54574444
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagg 82  Q
    ||||||||| |||||||||||  |||||||||||||| |||| |||||||    
T  54574493 tatttaatcctgagtcagagacctatgtgacagcgagatgcagagtgagg 54574444  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 42391943 - 42391983
Alignment:
Q  33 tatttaatcatgagtcagagatatatgtgacagcgaggtgc 73  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  42391943 tatttaatcatgagtcagagacctatgtgacagtgaggtgc 42391983  T

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