View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14286_low_2 (Length: 323)

Name: NF14286_low_2
Description: NF14286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14286_low_2
NF14286_low_2
[»] chr8 (6 HSPs)
chr8 (1-313)||(6875119-6875433)
chr8 (182-313)||(6864322-6864456)
chr8 (44-146)||(6864478-6864590)
chr8 (159-227)||(30389163-30389231)
chr8 (102-146)||(42215101-42215145)
chr8 (102-146)||(42215325-42215369)
[»] chr6 (5 HSPs)
chr6 (97-146)||(2455812-2455861)
chr6 (168-236)||(31461745-31461813)
chr6 (100-146)||(4420648-4420694)
chr6 (104-145)||(2205610-2205651)
chr6 (210-255)||(30641860-30641905)
[»] chr2 (2 HSPs)
chr2 (104-146)||(34652055-34652097)
chr2 (104-146)||(16867748-16867790)
[»] chr1 (2 HSPs)
chr1 (97-146)||(32548650-32548699)
chr1 (222-254)||(17420329-17420361)
[»] chr4 (2 HSPs)
chr4 (75-118)||(54462156-54462199)
chr4 (102-146)||(28300318-28300362)
[»] chr7 (1 HSPs)
chr7 (104-146)||(25596042-25596084)
[»] chr5 (2 HSPs)
chr5 (104-146)||(33533558-33533600)
chr5 (102-146)||(11684421-11684465)
[»] chr3 (6 HSPs)
chr3 (104-146)||(37273143-37273185)
chr3 (199-248)||(44237521-44237570)
chr3 (100-140)||(2825152-2825192)
chr3 (104-140)||(22667413-22667449)
chr3 (104-140)||(22724052-22724088)
chr3 (183-235)||(49605781-49605833)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 6875433 - 6875119
Alignment:
Q  1 aattaagtgcttatatcataagcgcgtatcatatacgcagttatgcctaagctgtttctgtaacataaaagacaaaataaagacaaactattttcatat- 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||     
T  6875433 aattaagtgcttatatcataagcgcgtatcatatacgtagttatgcctaagctgtttctataacataaaagacaaaataaagtcaaactattttcatata 6875334  T
Q  100 -gttattttcatatgctatcttggagagcttaaggaaataagttgaaannnnnnnatgggcatgccattagctattttcctatgctctttcaaacacttc 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  6875333 agttattttcatatgctatcttggagagcttaaggaaataagttgaaaaaaatttatgggcatgccattagctattttcctatgctctttcaaacacttc 6875234  T
Q  199 cacaagtacttatgcaaatagataaactcaaataaaccaattgaaacaggaccttaaatgactcagtgatccatatatgctgtttatatgggtatctaat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6875233 cacaagtacttatgcaaatagataaactcaaataaaccaattgaaacaggaccttaaatgactcagtgatccatatatgctgtttatatgggtatctact 6875134  T
Q  299 accttgttgtctgtg 313  Q
    | || ||||||||||    
T  6875133 atctagttgtctgtg 6875119  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 6864456 - 6864322
Alignment:
Q  182 gctctttcaaacacttccacaagtacttatgcaaatagataaactcaaataaaccaattgaaacaggaccttaaatgact--cagtgatcc-atatatgc 278  Q
    |||||| ||||||||| |  |||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||  ||||||||| | | ||||    
T  6864456 gctcttccaaacactttcttaagtgcttatgcaaatagatagactcaaataaaccaattgaaacagaacctaaaatgactcacagtgatccaaaaaatgc 6864357  T
Q  279 tgtttatatgggtatctaataccttgttgtctgtg 313  Q
    |||||||||||||||||||||||||||||||||||    
T  6864356 tgtttatatgggtatctaataccttgttgtctgtg 6864322  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 6864590 - 6864478
Alignment:
Q  44 tgcctaagctgtttctgtaacataaaag-acaaaataaagacaaactattttc---------atatgttattttcatatgctatcttggagagcttaagg 133  Q
    |||||||||| ||||| ||||||||||| | ||||||||| ||||||||||||         ||| ||| |||||||| ||||| ||||||||||| |||    
T  6864590 tgcctaagctatttctataacataaaaggataaaataaagtcaaactattttcatgtaagttataagttgttttcataagctattttggagagcttgagg 6864491  T
Q  134 aaataagttgaaa 146  Q
    ||||||| |||||    
T  6864490 aaataagctgaaa 6864478  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 30389163 - 30389231
Alignment:
Q  159 catgccattagctattttcctatgctctttcaaacacttccacaagtacttatgcaaatagataaactc 227  Q
    |||| |||||||||||||| |||||||| ||||||| |  ||| ||||||||||| | ||| |||||||    
T  30389163 catgtcattagctattttcatatgctctctcaaacagtgtcacgagtacttatgccagtagttaaactc 30389231  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 42215145 - 42215101
Alignment:
Q  102 tattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||||| |||||||||||||||||| | ||||||| |||||    
T  42215145 tattttcataagctatcttggagagcttatgtaaataagctgaaa 42215101  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 42215369 - 42215325
Alignment:
Q  102 tattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    ||||||||||||||||| ||||||||||| | ||||||| |||||    
T  42215369 tattttcatatgctatcctggagagcttatgtaaataagctgaaa 42215325  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 2455812 - 2455861
Alignment:
Q  97 tatgttattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  2455812 tatgttattttcataagctatcttggagagcttatggaaataagttgaaa 2455861  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 31461745 - 31461813
Alignment:
Q  168 agctattttcctatgctctttcaaacacttccacaagtacttatgcaaatagataaactcaaataaacc 236  Q
    |||||||||| || |||||| | |||| |  ||||||||||||||||||||||||| ||||||||||||    
T  31461745 agctattttcgtaagctcttgcgaacagtctcacaagtacttatgcaaatagataagctcaaataaacc 31461813  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 4420648 - 4420694
Alignment:
Q  100 gttattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    ||||||||| || |||||||||||||||||| ||||||||| |||||    
T  4420648 gttattttcctaagctatcttggagagcttatggaaataagctgaaa 4420694  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 2205651 - 2205610
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaa 145  Q
    |||||||| |||||||||||||||||| ||||||||| ||||    
T  2205651 ttttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 30641860 - 30641905
Alignment:
Q  210 atgcaaatagataaactcaaataaaccaattgaaacaggaccttaa 255  Q
    ||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  30641860 atgcatatagataaactcaaataagccaattcaaacaggcccttaa 30641905  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 34652097 - 34652055
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaa 34652055  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 16867748 - 16867790
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  16867748 ttttcacaagctatcttggagagcttatggaaataagttgaaa 16867790  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 32548699 - 32548650
Alignment:
Q  97 tatgttattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||| |||||||| |||||||||| ||||||| |||||||||||||||    
T  32548699 tatgttgttttcataagctatcttggggagcttatggaaataagttgaaa 32548650  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 17420329 - 17420361
Alignment:
Q  222 aaactcaaataaaccaattgaaacaggacctta 254  Q
    ||||||||||||||||||||||||||| |||||    
T  17420329 aaactcaaataaaccaattgaaacaggccctta 17420361  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 54462199 - 54462156
Alignment:
Q  75 aaataaagacaaactattttcatatgttattttcatatgctatc 118  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||    
T  54462199 aaataaagtcaaactattttcatatgttgttttcataagctatc 54462156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 28300362 - 28300318
Alignment:
Q  102 tattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||||| ||||||||| |||||||| | |||||||||||||    
T  28300362 tattttcataggctatcttgaagagcttatgaaaataagttgaaa 28300318  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 25596042 - 25596084
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||| |||||||||||||||||| | |||||||||||||    
T  25596042 ttttcataagctatcttggagagcttatgaaaataagttgaaa 25596084  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 33533600 - 33533558
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  33533600 ttttcacaagctatcttggagagcttatggaaataagttgaaa 33533558  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 11684421 - 11684465
Alignment:
Q  102 tattttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||||| |||||  ||||||||||| |||||||||||||||    
T  11684421 tattttcataagctatgctggagagcttacggaaataagttgaaa 11684465  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 37273143 - 37273185
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataagttgaaa 146  Q
    |||||||| ||||||||||||| |||| |||||||||||||||    
T  37273143 ttttcataagctatcttggagaacttatggaaataagttgaaa 37273185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 44237521 - 44237570
Alignment:
Q  199 cacaagtacttatgcaaatagataaactcaaataaaccaattgaaacagg 248  Q
    ||||||| ||||||  | |||||||||||||||||||||||| |||||||    
T  44237521 cacaagtgcttatgtcagtagataaactcaaataaaccaatttaaacagg 44237570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 2825152 - 2825192
Alignment:
Q  100 gttattttcatatgctatcttggagagcttaaggaaataag 140  Q
    |||||||||||| |||||||||||||||||| | |||||||    
T  2825152 gttattttcataagctatcttggagagcttatgaaaataag 2825192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22667413 - 22667449
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataag 140  Q
    |||||||| |||||||||||||||||| |||||||||    
T  22667413 ttttcataagctatcttggagagcttacggaaataag 22667449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 22724052 - 22724088
Alignment:
Q  104 ttttcatatgctatcttggagagcttaaggaaataag 140  Q
    |||||||| |||||||||||||||||| |||||||||    
T  22724052 ttttcataagctatcttggagagcttacggaaataag 22724088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 49605833 - 49605781
Alignment:
Q  183 ctctttcaaacacttccacaagtacttatgcaaatagataaactcaaataaac 235  Q
    |||| |||||||||  ||||||||||||||| |  ||||||||||||||||||    
T  49605833 ctctctcaaacactctcacaagtacttatgctagaagataaactcaaataaac 49605781  T

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