View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14286_low_5 (Length: 238)
Name: NF14286_low_5
Description: NF14286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14286_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 31241143 - 31241363
Alignment:
| Q |
18 |
agctcttatgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaagctgggtggcatacaattgctctgctgcttctgagaagacagcaaag |
117 |
Q |
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| T |
31241143 |
agctcttatgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaagttgggtggcatacaattgctctgctgcttctgagaagacagcaaag |
31241242 |
T |
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| Q |
118 |
ttaatgtgagtaccgagtagtacaaaatcgagaggttaaatgcattaatgagtgatgaggttaaattcattaatgtgagtaatgaggttcatgtatcatt |
217 |
Q |
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| T |
31241243 |
ttaatgtgagtaccgagtagtacaaaatcgagaggttaaatgcattaatgagtaatgaggttaaattcattaatgtgagtaatgaggttcatgtatcatt |
31241342 |
T |
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| Q |
218 |
tgaatatattttgattaattc |
238 |
Q |
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| T |
31241343 |
tgaatatcttttgattaattc |
31241363 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 31255244 - 31255338
Alignment:
| Q |
22 |
cttatgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaagctgggtggcatacaattgctctgctgcttctgagaagacagcaaa |
116 |
Q |
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| T |
31255244 |
cttatgttctcttgtgtgtcaaagaatcccatctcttgaagctgtgtaagctgggtggcatacaattgctctggtggctctgagaagacaacaaa |
31255338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 9494771 - 9494706
Alignment:
| Q |
22 |
cttatgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaagctgggtggcatacaat |
87 |
Q |
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| T |
9494771 |
cttaagttctcttgtgtgtcaaagaatcccatctcttgaagctgggtaagctgggtagcatacaat |
9494706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7206106 - 7206158
Alignment:
| Q |
18 |
agctcttatgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaa |
70 |
Q |
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| T |
7206106 |
agcttttacgttttcttgtgtgtcaaagaatcccatctcttgaagctgtgaaa |
7206158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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