View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_1 (Length: 536)
Name: NF14287_low_1
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 21227572 - 21228040
Alignment:
| Q |
18 |
gttggcaggttcaatatatggaaaaagaatcctcataaaaaaggacatttcttggcagaaaaatttctcatgattaaagaatattcataagaatgtatcc |
117 |
Q |
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| T |
21227572 |
gttggcaggttccatatatggaaaaagaatcctcataaaaaaggacatttcttggcagaaaaatttctcatgattaaagaatattcataagaatgtatcc |
21227671 |
T |
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| Q |
118 |
cttagttccttgcttgaatcccaaaaagatacattttatggcttttgcatcaagnnnnnnnnatctgaattgctgtaaagtagaagcaaaagcaagatgc |
217 |
Q |
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| T |
21227672 |
cttagttccttgcttgaatcccaaaaagatgcattttatggcttttgcatcaagttttttttatctgaattgctgtaaagtagaagcaaaagcaagatgc |
21227771 |
T |
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| Q |
218 |
cgaaaaactttcaaatgatccaaaagtaagtcatttggaaagtacttttattttgaaggacaagggaatggagcctgttgataatatatatggcatgact |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21227772 |
cgaaaaactttcaaatgatccaaaagtaaggcatttggaaagtacttttattttgaaggacaagggaatggagcctgttgataatatatatggcatgact |
21227871 |
T |
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| Q |
318 |
ggcagcataagaccgaaattgtttgtgtttgtgtttggaatggacttttactttgaaacattagacatcgagtcacatttaagatgtgtttgtgttttct |
417 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21227872 |
ggcagcataagaccaaaattgtttgtgtttgtgtttggaatggacttttactttgaaacattagacatcgagtcacatttaagatgtgtttatgttttct |
21227971 |
T |
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| Q |
418 |
tccggctacggcattttgttgaggagttttcacaccagttctttagtggataatatcagtccattgtct |
486 |
Q |
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| T |
21227972 |
tccggctacggcattttgttgaggagttttcgcacaagttctttagtggataatatcagtccattgtct |
21228040 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 495 - 535
Target Start/End: Complemental strand, 7165105 - 7165065
Alignment:
| Q |
495 |
agttgctggtgaagctaaaaattcttaatcttagtcattct |
535 |
Q |
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|||| |||| ||||||||||||||||||||| ||||||||| |
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| T |
7165105 |
agtttctggagaagctaaaaattcttaatctcagtcattct |
7165065 |
T |
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