View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_10 (Length: 320)
Name: NF14287_low_10
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 41431246 - 41430938
Alignment:
| Q |
1 |
gtctttgcgttactcacactctgaagcaatattctaacagaaggatacagatcagcaatacaaaatctcccaacaaacttactatttccaccattgcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41431246 |
gtctttgcgttactcacactctgaagcaatattctaacagaaggatacagatcagcaatacaaaatctcccaacaaacttactatttcctccattgcagt |
41431147 |
T |
|
| Q |
101 |
tataaacacttgttggtgtttggtccttttgccgaaaactgttcttgatgttatctcatgtgtcattgagaatatgttccgagtgagattaacaattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431146 |
tataaacacttgttggtgtttggtccttttgccgaaaactgttcttgatgttatctcatgtgtcattgagaatatgttccgagtgagattaacaattgat |
41431047 |
T |
|
| Q |
201 |
ccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgactggacacattttgaacttaatagctctgtaacat |
300 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41431046 |
ccttcacatgtacatatggatttaactagttttgaaacctcttcttctcttatggactgaaatgactggacacattttgaacttaatagctctgtaacat |
41430947 |
T |
|
| Q |
301 |
atgtatatt |
309 |
Q |
| |
|
||||||||| |
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| T |
41430946 |
atgtatatt |
41430938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 41328134 - 41327984
Alignment:
| Q |
149 |
tgttatctcatgtgtcattgagaatatgttccgagtgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttct |
248 |
Q |
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||||||| ||| |||||||||||| || ||||||||||||||||||| ||||||||||| || | ||| |||||||| || |||| ||||| |||||| |
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| T |
41328134 |
tgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatccttcacttgcagttattgatttaacaaggtttgacacctcatcttct |
41328035 |
T |
|
| Q |
249 |
cttatggactgaaatgactggacacattttgaacttaatagctctgtaaca |
299 |
Q |
| |
|
||||||||| |||||| || |||| |||| ||||||||||||| ||||| |
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| T |
41328034 |
cttatggacctaaatgattgtacacgctttgcacttaatagctctataaca |
41327984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 293
Target Start/End: Complemental strand, 41324347 - 41324092
Alignment:
| Q |
39 |
agaaggatacagatcagcaatacaaaatc-tcccaacaaacttactatttccaccattgcagttataaacacttgttggtgtttggtccttttgccgaaa |
137 |
Q |
| |
|
||||||||||| |||| ||||||||| | |||||||||||||||||||||| | | ||| | | ||||| ||| ||||||||| |||||||||| ||| |
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| T |
41324347 |
agaaggatacaaatcaacaatacaaatgcctcccaacaaacttactatttcctctactgctgatttaaacgattgctggtgtttgctccttttgccaaaa |
41324248 |
T |
|
| Q |
138 |
actgttcttgatgttatctcatgtgtcattgagaatatgttccgagtgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaa |
237 |
Q |
| |
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| | | | ||||||| ||| |||||||||||| || || ||||||||||||||||||||||||||| || | ||| ||| || | || |||| | |
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| T |
41324247 |
gccgcccgcgttgttatcccatatgtcattgagaaaatcttatgagtgagattaacaattgatccttcacttgcagttattgatgtagcaagatttgata |
41324148 |
T |
|
| Q |
238 |
cctcttcttctcttatggactgaaatgactggacacattttgaacttaatagctct |
293 |
Q |
| |
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| || ||||||||| ||||| |||||| ||||||| |||| ||||||||||||| |
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|
| T |
41324147 |
cttcatcttctcttgtggacctaaatgattggacacgctttgcacttaatagctct |
41324092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 41332147 - 41331997
Alignment:
| Q |
149 |
tgttatctcatgtgtcattgagaatatgttccgagtgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttct |
248 |
Q |
| |
|
||||||| ||| |||||||||||| || |||||||||||||| |||| |||||||||| || | ||| |||||||| || ||| || || |||||| |
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| T |
41332147 |
tgttatcccatttgtcattgagaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttct |
41332048 |
T |
|
| Q |
249 |
cttatggactgaaatgactggacacattttgaacttaatagctctgtaaca |
299 |
Q |
| |
|
||||||||| |||||| ||||||| |||| ||||||||||||| ||||| |
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|
| T |
41332047 |
cttatggacctaaatgattggacacgctttgcacttaatagctctataaca |
41331997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 299
Target Start/End: Complemental strand, 41316249 - 41316017
Alignment:
| Q |
67 |
ctcccaacaaacttactatttccaccattgcagttataaacacttgttggtgtttggtccttttgccgaaaactgttcttgatgttatctcatgtgtcat |
166 |
Q |
| |
|
|||||||||||||| ||| |||| | ||||| | | ||||||||| |||||||||| ||||||| || ||| | | || | ||||||| ||| |||| | |
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|
| T |
41316249 |
ctcccaacaaacttgctacttcctctattgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgt |
41316150 |
T |
|
| Q |
167 |
tgagaatatgttccgagtgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgac |
266 |
Q |
| |
|
||| || || ||| ||||||||||||||| ||||||||||| || | ||| |||||||| || ||| || || ||||||||||| ||| |||||| |
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|
| T |
41316149 |
tgacaaaatcttctgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgat |
41316050 |
T |
|
| Q |
267 |
tggacacattttgaacttaatagctctgtaaca |
299 |
Q |
| |
|
||||||| |||| |||||||| ||| ||||| |
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|
| T |
41316049 |
tggacacgctttgcgcttaatagttctataaca |
41316017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 41369685 - 41369576
Alignment:
| Q |
184 |
tgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgactggacacattttgaact |
283 |
Q |
| |
|
|||||| ||||| | || |||||| ||| |||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||| | | |
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| T |
41369685 |
tgagatcaacaactaatgcttcaccagtagatattgatttaactagtgatgaaacctcttcttctcttatggacctaaatgattggacacgctttgcatt |
41369586 |
T |
|
| Q |
284 |
taatagctct |
293 |
Q |
| |
|
|||||||||| |
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|
| T |
41369585 |
taatagctct |
41369576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 41366295 - 41366183
Alignment:
| Q |
181 |
gagtgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgactggacacattttga |
280 |
Q |
| |
|
||||||||||||||| |||||||||| || | ||| |||||||| || |||| |||||||||||||| |||||| |||||| | ||||| ||||| |
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|
| T |
41366295 |
gagtgagattaacaaccgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttttgc |
41366196 |
T |
|
| Q |
281 |
acttaatagctct |
293 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41366195 |
acttaatagctct |
41366183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 31188759 - 31188828
Alignment:
| Q |
184 |
tgagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttat |
253 |
Q |
| |
|
|||||||||||||||||||||||| || | |||| |||||||| || |||| ||||||||||||||||| |
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|
| T |
31188759 |
tgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctcttcttctcttat |
31188828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 41359890 - 41359832
Alignment:
| Q |
240 |
tcttcttctcttatggactgaaatgactggacacattttgaacttaatagctctgtaaca |
299 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
41359890 |
tcttcttctcttatggacctaaatgattggacacatttt-cacttaatagctctgtaaca |
41359832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 31225052 - 31224950
Alignment:
| Q |
186 |
agattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgactggacacattttgaactta |
285 |
Q |
| |
|
|||||||||||||||||||||| || | |||| |||| ||| || |||| ||||||||||||||||| || |||||| ||||||| |||| ||||| |
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|
| T |
31225052 |
agattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctcttcttctcttatatacctaaatgattggacacgctttgcactta |
31224953 |
T |
|
| Q |
286 |
ata |
288 |
Q |
| |
|
||| |
|
|
| T |
31224952 |
ata |
31224950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 31188609 - 31188654
Alignment:
| Q |
35 |
taacagaaggatacagatcagcaatacaaaa-tctcccaacaaact |
79 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
31188609 |
taacagaaggatacacatcagcaatacaaaattctcccagcaaact |
31188654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 41337040 - 41336932
Alignment:
| Q |
185 |
gagattaacaattgatccttcacatgtacatatggatttaactagtcttgaaacctcttcttctcttatggactgaaatgactggacacattttgaactt |
284 |
Q |
| |
|
||||||||| |||||||||||| || | |||| |||||||| || || |||||||||||||||||| | ||| || ||||||| ||||| |||| |
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|
| T |
41337040 |
gagattaacgattgatccttcatttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattggacacgttttgcactt |
41336941 |
T |
|
| Q |
285 |
aatagctct |
293 |
Q |
| |
|
||||||||| |
|
|
| T |
41336940 |
aatagctct |
41336932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 17249301 - 17249400
Alignment:
| Q |
39 |
agaaggatacagatcagcaatacaaaatc-tcccaacaaacttactatttccaccattgcagttataaacacttgttggtgtttggtccttttgccgaaa |
137 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||||||||| ||||||||| | ||||| | | | |||||||||||||||||| ||||||| |||||| |
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|
| T |
17249301 |
agaaggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttccttttcccgaaa |
17249400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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