View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_12 (Length: 304)
Name: NF14287_low_12
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 46 - 286
Target Start/End: Complemental strand, 31083238 - 31083001
Alignment:
| Q |
46 |
aaaagaattaatgtttgtttaagttttctgaatnnnnnnngttatgcaaattttnnnnnnnttaataaacttgttgatggacgacatattactagtttac |
145 |
Q |
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| T |
31083238 |
aaaagaattaatgtttgtttaagttttctgaataaaaaaagttatgcaaatttttaaaaaattaataaacttgttaatggac---atattactagtttac |
31083142 |
T |
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| Q |
146 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
245 |
Q |
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| T |
31083141 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
31083042 |
T |
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| Q |
246 |
aatcagttattgcattttcgattcgatgatcactctcatac |
286 |
Q |
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| T |
31083041 |
aatcagttattgcattttcgattcgatgatcactctcatac |
31083001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31083313 - 31083253
Alignment:
| Q |
1 |
catagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
61 |
Q |
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| T |
31083313 |
catagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
31083253 |
T |
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