View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_13 (Length: 283)
Name: NF14287_low_13
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 36475095 - 36475325
Alignment:
| Q |
36 |
gaactgtgacactaaaatagagtattataattatataaaatcgtaaatgcccctttttcatacgactcttttgatatataatctaatggttttgnnnnnn |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36475095 |
gaactgtgacactaaaatagagtattataattatataaaatcgtaaatactcctttttcatacgactcttttgatatataatctaatggttttgaaaaaa |
36475194 |
T |
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| Q |
136 |
nnctatttttgcatatcgaactcgaagtgccatgcttctttttacttaatattggtttaggcatagnnnnnnncttcttttctgaaaattaagaaaataa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
36475195 |
aactatttttgcatatcgaactcgaagtgccatgcttctttttacttaatattggtttaggcatagtttttttcttcttttatgaaaattaagaaaataa |
36475294 |
T |
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| Q |
236 |
gaatcattcgcaccaagcgtgagggaatgtta |
267 |
Q |
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||||||||||||||||| | |||||||||||| |
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| T |
36475295 |
gaatcattcgcaccaag-gcgagggaatgtta |
36475325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 5851110 - 5851190
Alignment:
| Q |
47 |
ctaaaatagagtattataattatataaaatcgtaaatgcccctttttcatacgactcttttgatatataatctaatggttt |
127 |
Q |
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|||||| | |||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||| |||| |
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| T |
5851110 |
ctaaaacatagtattataattatataaaatcgtaaatacctctttttcataagactctttcgatatataatctaattgttt |
5851190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 18332823 - 18333046
Alignment:
| Q |
40 |
tgtgacactaaaatagagtattataattatataaaatcgtaaatgcccctttttcatacgactcttttgatatataatctaatggttttgnnnnnnnnct |
139 |
Q |
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| T |
18332823 |
tgtgacactaaaatagagtattttaattatataaaatagtaaatacccctttttcatacgactctttcgatatataatctaatggttttgaaaaataata |
18332922 |
T |
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| Q |
140 |
atttttgcatatcgaactcgaagtgccatgcttctttttacttaatattggtttaggcatagnnnnnnncttcttttctgaaaattaagaaaataagaat |
239 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
18332923 |
atttttgcatatcgaactcgaagtgccatgctt-tttttacttaatattggtttaggcatagttttttttttcttttctaaaaattaagaaaataagaat |
18333021 |
T |
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| Q |
240 |
cattcgcaccaagcgtgagggaatg |
264 |
Q |
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| T |
18333022 |
cattcgcgctaagcgtgagggaatg |
18333046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 46507369 - 46507518
Alignment:
| Q |
40 |
tgtgacactaaaatagagtattataattatataaaatcgtaaatgcccctttttcatacgactcttttgatatataatctaatggttttgnnnnnnnnct |
139 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46507369 |
tgtgatactaaaatagagtattataattatataaaatcgtaaatacccctttttcatacgactctttcaatatataatctaatggttttgaaaagaaaaa |
46507468 |
T |
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| Q |
140 |
atttttgcatatcgaactcgaagtgccatgcttctttttacttaatattg |
189 |
Q |
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| T |
46507469 |
aaaaatgcatatcgaactcgaagtgccatgcttttttttacttaatattg |
46507518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 35632512 - 35632477
Alignment:
| Q |
229 |
aaaataagaatcattcgcaccaagcgtgagggaatg |
264 |
Q |
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| T |
35632512 |
aaaataagaatcattcgcgccaagcgtgagggaatg |
35632477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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