View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_16 (Length: 269)
Name: NF14287_low_16
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 52319886 - 52320142
Alignment:
| Q |
1 |
taaaccggttctgctattaaaactatattattagtgaatgttgagttccttgaattccc---gacggtgacacctccggattccaccaagacctatttcc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52319886 |
taaaccggttctgctattaaaactatattattagtgaatgttgagttccttgaattcccagcgacggtgacacctccggattccaccaagacctatttcc |
52319985 |
T |
|
| Q |
98 |
ttggtggcgcaggttcttaaaacaacagacattattgctttccttgtttgtgttttcattatggagtannnnnnncttcttcttcataaacaattaatta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
52319986 |
ttggtggcgcaggttcttaaaacaacagacattattgctttccttgtttgtgttttcattatggagtatttttg--tttttcttcataaacaattaatta |
52320083 |
T |
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| Q |
198 |
attaataagtttttcattcattcaa----aattattactactaataagtttccatgcat |
252 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52320084 |
attaataagtttttcattcattcaaaattaattattactactaataagtttccatgcat |
52320142 |
T |
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