View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_18 (Length: 237)
Name: NF14287_low_18
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 2561381 - 2561163
Alignment:
| Q |
3 |
aaagccaggaatatgacggaattcttcgactttattactgaagactagtgtctcacttagaaagagggtgtctggcttgtaatatcgaactaggaacttt |
102 |
Q |
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| T |
2561381 |
aaagccaggaatatgatggaattcctcgactttattactgaagactagtgtctcacttagaaagagggcatctggcttgtaatatcgaactaggaacttt |
2561282 |
T |
|
| Q |
103 |
aaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcatttttagaaatgcacaccctgacaagaagcaagatcatattg |
202 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561281 |
aaattagggactgcgctcaggctccctagacctcgacagttctagctaataacactcatttttagaaatgcacaccctgacaagaagcaagatcatattg |
2561182 |
T |
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| Q |
203 |
aaacaatagcatatggagg |
221 |
Q |
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||||||||||||||||||| |
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| T |
2561181 |
aaacaatagcatatggagg |
2561163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 32953556 - 32953483
Alignment:
| Q |
88 |
cgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
161 |
Q |
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|||| |||||||||||||||||||| || |||| |||| |||| ||||||||| ||| | ||||| |||||||| |
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| T |
32953556 |
cgaattaggaactttaaattaggaattgtgctcgggctacctaaacctcgacaattccaactaatgacactcat |
32953483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 25908301 - 25908393
Alignment:
| Q |
52 |
gtctcacttagaaagagggtgtctggcttgtaatatcgaactaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
144 |
Q |
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| T |
25908301 |
gtctcacttaagaagagggtgtccggcttataatagcgaactaaatactttaattttggaactacgctcaggttcgctaaacctcggcagttc |
25908393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 9613522 - 9613594
Alignment:
| Q |
91 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcattt |
163 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||| ||| ||||||||| | | ||||| |||||||| |
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| T |
9613522 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttccaccaaataagactcattt |
9613594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 46094292 - 46094362
Alignment:
| Q |
91 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttctagctaataacactcat |
161 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||| ||| ||||| ||| | ||||| |||||||| |
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| T |
46094292 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacaattccaactaatgacactcat |
46094362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 3966317 - 3966370
Alignment:
| Q |
91 |
actaggaactttaaattaggaactgcgctcaggcttcctagacctcgacagttc |
144 |
Q |
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|||||| |||||||||||||||||| |||| |||| |||| ||| ||||||||| |
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| T |
3966317 |
actaggtactttaaattaggaactgtgctcgggctacctaaaccccgacagttc |
3966370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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