View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_4 (Length: 454)
Name: NF14287_low_4
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 59 - 439
Target Start/End: Original strand, 2691983 - 2692363
Alignment:
| Q |
59 |
gaaccatacatgaaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcacctta |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2691983 |
gaaccatacatgaaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcacctta |
2692082 |
T |
|
| Q |
159 |
cctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaa |
258 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692083 |
cctaaatcagaatgagcaagacgaatatgcaatgtatttccatcaccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaa |
2692182 |
T |
|
| Q |
259 |
ttccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaacttcat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2692183 |
ttccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacatgtgcaaagtcaggtaacttcat |
2692282 |
T |
|
| Q |
359 |
atacgtacgctccaagaaaccatcctcgccaaaactaccattactctgatcacccttcaatgctgtgatcctcgtacaacc |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2692283 |
atacgtacgctccaagaaaccatcctcgccaaaactaccattactctgattacccttcaatgctgtgatcctcgtacaacc |
2692363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 156 - 436
Target Start/End: Original strand, 2699779 - 2700059
Alignment:
| Q |
156 |
ttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaac |
255 |
Q |
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|||||||||||||||| | | |||||||| |||| | ||||| || ||| ||| ||| ||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
2699779 |
ttacctaaatcagaataagcgagacgaatgtgcagagcgtttccttctccatgttgaaagtgtagaatatcaaccaaatctccataccaaaccatacaac |
2699878 |
T |
|
| Q |
256 |
caattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaactt |
355 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||| || ||| |||||||||| ||||| ||||||||||| |
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| T |
2699879 |
caattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatctttcgtatcaaccacacgcgcaaaatcaggtaactt |
2699978 |
T |
|
| Q |
356 |
catatacgtacgctccaagaaaccatcctcgccaaaactaccattactctgatcacccttcaatgctgtgatcctcgtaca |
436 |
Q |
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|||| | |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
2699979 |
catactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatcacccttcaatgctgtcatcctcctaca |
2700059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2691911 - 2691944
Alignment:
| Q |
1 |
aaaaatctgagactcatcatcttcagaaacaatg |
34 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2691911 |
aaaaatctgagactcatcatcttcagaaacaatg |
2691944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 103 - 436
Target Start/End: Original strand, 14521101 - 14521434
Alignment:
| Q |
103 |
aattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatc |
202 |
Q |
| |
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|||||||| || |||||||||||||||||||| |||||||||||||| | | ||||||||||||||| ||| |||||||||||| || | |||||| || |
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| T |
14521101 |
aattgaagatcaatatacatggaaacaaagctaaaggaaccctttgatgtatcttacctaaatcagactgagcaagacgaatatataacgaatttccttc |
14521200 |
T |
|
| Q |
203 |
gccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaa |
302 |
Q |
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| ||| | || ||||||||||| ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |
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| T |
14521201 |
atcgcgtcctaagtgttgaacatcgaccaaatctccatgccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaa |
14521300 |
T |
|
| Q |
303 |
caattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaacttcatatacgtacgctccaagaaaccatcctcgccaaaactaccattac |
402 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||| | | || | |
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| T |
14521301 |
caattaccttcacaatccttagtatcaaccacacgtgcaaagtcgggtaacttcatactcgtacgctcaaagaaaccatcctcgtcaaatccatcacttg |
14521400 |
T |
|
| Q |
403 |
tctgatcacccttcaatgctgtgatcctcgtaca |
436 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
14521401 |
tctgatcacccttcaatgctgtcttcctcgtaca |
14521434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 36289336 - 36289235
Alignment:
| Q |
218 |
ttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaa |
317 |
Q |
| |
|
||||| |||||| || || |||| ||||| |||||| ||||||||||| | | | |||| |||||||||||| |||||| || |||||| ||||||||| |
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| T |
36289336 |
ttgaaaatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaa |
36289237 |
T |
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| Q |
318 |
tc |
319 |
Q |
| |
|
|| |
|
|
| T |
36289236 |
tc |
36289235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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