View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14287_low_6 (Length: 357)

Name: NF14287_low_6
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14287_low_6
NF14287_low_6
[»] chr8 (4 HSPs)
chr8 (16-343)||(1424066-1424390)
chr8 (52-163)||(10711976-10712088)
chr8 (52-112)||(44420639-44420699)
chr8 (63-112)||(16985659-16985708)
[»] chr3 (5 HSPs)
chr3 (52-125)||(50056893-50056966)
chr3 (52-140)||(28095952-28096039)
chr3 (118-164)||(50057279-50057325)
chr3 (118-197)||(50057409-50057488)
chr3 (52-99)||(50061382-50061429)
[»] chr7 (2 HSPs)
chr7 (76-161)||(39364335-39364420)
chr7 (52-112)||(29443616-29443676)
[»] chr5 (1 HSPs)
chr5 (50-197)||(1678916-1679066)
[»] chr2 (3 HSPs)
chr2 (57-160)||(25476329-25476432)
chr2 (52-125)||(17508848-17508921)
chr2 (52-112)||(38500219-38500282)
[»] chr4 (2 HSPs)
chr4 (52-112)||(11393149-11393209)
chr4 (52-112)||(11402876-11402936)
[»] scaffold0245 (1 HSPs)
scaffold0245 (52-99)||(12452-12499)
[»] scaffold0118 (1 HSPs)
scaffold0118 (52-111)||(18936-18995)
[»] chr1 (1 HSPs)
chr1 (52-99)||(1286185-1286232)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 1424066 - 1424390
Alignment:
Q  16 caaaatgaatatttcttggggagctggatccctatatatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcacgtg 115  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  1424066 caaaatgaatatttcttggagagctggatccctatatata--aacacattagtagttgtacattttttgtctctgaaatataatgtttagttttcacgtg 1424163  T
Q  116 gcatcagagctcctgatcttggggggtcttgtttccgcataaaccctagttgcagtccttgcaattacttttgcttttttcgtctttattgtgagttttt 215  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |  |||||||||||||||||||||||||||||||||| |    
T  1424164 gcatcagagctcccgatcttgggaggtcttgtttccgcataaaccctagttgcagtcttt-cggttacttttgcttttttcgtctttattgtgagtttat 1424262  T
Q  216 gccttcatcgcggactctttgagatcctaaaagccctgttcattagaaaacactattcaccatgcaaactgtttatcgcaagtactgttcattccgagtg 315  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  1424263 gcgttcatcgcggactctttgagatcctaaaagccctgttcattagaaaacactattcaccatgcacactgtttatcgcaagtactgttcatttcgagtg 1424362  T
Q  316 cactttccgtagtacgccactgttcatc 343  Q
    |||||||| |||| ||||||||||||||    
T  1424363 cactttccatagtgcgccactgttcatc 1424390  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 10711976 - 10712088
Alignment:
Q  52 tatataaacacattagtagttgtgcatt-ttttatctctgaaatataatgtttagttttcacgtggcatcagagctcctgatcttggggggtcttgtttc 150  Q
    |||||||| |||||||| | | | |||| |||||||||||| ||||||| || ||||||||| |||||||||| |||   ||||||||| ||||||||||    
T  10711976 tatataaatacattagtggatatacattattttatctctgacatataatattcagttttcacatggcatcagaactctcaatcttggggagtcttgtttc 10712075  T
Q  151 cgcataaacccta 163  Q
    |||||||||||||    
T  10712076 cgcataaacccta 10712088  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 44420639 - 44420699
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcac 112  Q
    ||||||||||||||||| |||||  ||  ||||||||||||||||||| || |||||||||    
T  44420639 tatataaacacattagtggttgtatatcatttatctctgaaatataatattcagttttcac 44420699  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 16985708 - 16985659
Alignment:
Q  63 attagtagttgtgcattttttatctctgaaatataatgtttagttttcac 112  Q
    |||||| ||||| |||| ||||||||||||||||||| || |||||||||    
T  16985708 attagtggttgtacattatttatctctgaaatataatattcagttttcac 16985659  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 50056893 - 50056966
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcacgtggcatcagagc 125  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||||| || ||||||||| ||| ||||||||    
T  50056893 tatataaacacattagtggttgtacattatttatctctgaaatataatattcagttttcacatggtatcagagc 50056966  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 28096039 - 28095952
Alignment:
Q  52 tatataaacacattagtagttgtgcatt-ttttatctctgaaatataatgtttagttttcacgtggcatcagagctcctgatcttggggg 140  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||||||| ||| |||||||| ||||||  ||||||| |||||||||||    
T  28096039 tatataaacacattagtggttgtaaattattttatctctgaaatataatattttgttttcacatggcat--gagctcccgatcttggggg 28095952  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 50057279 - 50057325
Alignment:
Q  118 atcagagctcctgatcttggggggtcttgtttccgcataaaccctag 164  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||    
T  50057279 atcagagctcccgatcttggggggtgttgcttccgcataaaccctag 50057325  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 50057409 - 50057488
Alignment:
Q  118 atcagagctcctgatcttggggggtcttgtttccgcataaaccctagttgcagtccttgcaattacttttgcttttttcg 197  Q
    ||||||||||| ||||||||||||  ||| |||| ||||||||||||  || ||| ||||  |||||||| |||||||||    
T  50057409 atcagagctcccgatcttggggggcgttgcttccacataaaccctagccgccgtctttgcggttactttttcttttttcg 50057488  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 50061382 - 50061429
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataat 99  Q
    ||||||||||||||||| ||| | |||| |||||||||||||||||||    
T  50061382 tatataaacacattagtcgttctacattatttatctctgaaatataat 50061429  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 39364420 - 39364335
Alignment:
Q  76 cattttttatctctgaaatataatgtttagttttcacgtggcatcagagctcctgatcttggggggtcttgtttccgcataaaccc 161  Q
    |||| ||||||| ||||||||||  || ||||||||| ||  ||||||||||||||||||| |||| |||| ||||||||||||||    
T  39364420 cattatttatctttgaaatataacattcagttttcacatgatatcagagctcctgatcttgaggggccttgcttccgcataaaccc 39364335  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 29443676 - 29443616
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcac 112  Q
    ||||||||||||||||| |||||  ||| ||||||  ||||||||||| || |||||||||    
T  29443676 tatataaacacattagtggttgtatattatttatcagtgaaatataatattcagttttcac 29443616  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 1679066 - 1678916
Alignment:
Q  50 tatatataaacacattagtagttgtgcatttttt---atctctgaaatataatgtttagttttcacgtggcatcagagctcctgatcttggggggtcttg 146  Q
    |||||||||||| |||||| ||||| ||||||||   ||||||||||||||||  |  |||||||| |||||||  ||||  ||||||| ||||| ||||    
T  1679066 tatatataaacatattagtggttgtacatttttttttatctctgaaatataatagtatgttttcacatggcatcgaagcttttgatcttagggggccttg 1678967  T
Q  147 tttccgcataaaccctagttgcagtccttgcaattacttttgcttttttcg 197  Q
     |||| |||||||| |||  || | | ||||  ||||||||||||||||||    
T  1678966 cttccacataaaccttagccgccgcctttgcgtttacttttgcttttttcg 1678916  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 25476432 - 25476329
Alignment:
Q  57 aaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcacgtggcatcagagctcctgatcttggggggtcttgtttccgcata 156  Q
    |||||||||||| |||||  ||| ||||||| ||||||||||| || ||||||||| ||||||||||||||  ||||    |||| |||| |||||||||    
T  25476432 aaacacattagtggttgtaaattatttatctttgaaatataatcttcagttttcacatggcatcagagctctcgatcactaggggccttgcttccgcata 25476333  T
Q  157 aacc 160  Q
    ||||    
T  25476332 aacc 25476329  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 17508848 - 17508921
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcacgtggcatcagagc 125  Q
    ||||||||||||||||| ||||| |||| ||||| ||||||||||||| || | ||||||| ||| ||||||||    
T  17508848 tatataaacacattagtggttgtacattatttatttctgaaatataatattcaattttcacatggtatcagagc 17508921  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 38500219 - 38500282
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatc---tctgaaatataatgtttagttttcac 112  Q
    ||||||||||||||||| ||||| |||| ||||||   ||||||||||||| || |||||||||    
T  38500219 tatataaacacattagtggttgtacattatttatctcgtctgaaatataatattcagttttcac 38500282  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 11393149 - 11393209
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcac 112  Q
    ||||||||||||| ||| ||||| |||| ||||||||||||||||||| || |||||||||    
T  11393149 tatataaacacatcagtggttgtacattatttatctctgaaatataatattaagttttcac 11393209  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 11402876 - 11402936
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttcac 112  Q
    ||||||||||||| ||| ||||| |||| ||||||||||||||||||| || |||||||||    
T  11402876 tatataaacacatcagtggttgtacattatttatctctgaaatataatattaagttttcac 11402936  T

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Target: scaffold0245 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 12499 - 12452
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataat 99  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  12499 tatataaacacattagtggttgtacattatttatctctgaaatataat 12452  T

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Target: scaffold0118 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 18936 - 18995
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataatgtttagttttca 111  Q
    ||||||||||||||| | ||||| |||| ||||||||| ||||||||| |||||||||||    
T  18936 tatataaacacattaatggttgtacattatttatctctaaaatataatatttagttttca 18995  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 1286232 - 1286185
Alignment:
Q  52 tatataaacacattagtagttgtgcattttttatctctgaaatataat 99  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  1286232 tatataaacacattagtggttgtacattatttatctctgaaatataat 1286185  T

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