View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_7 (Length: 351)
Name: NF14287_low_7
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 52319812 - 52319460
Alignment:
| Q |
1 |
ctagtttgataaactaaccaagttttattaaagttgtttttaaaaactaatccaatcaattaatctggttcagttcaatatatggaccgcgaacacccct |
100 |
Q |
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| T |
52319812 |
ctagtttgagaaactaaccaatttttattaaagttgtttttaaaaactaaaccaatctattaatctggttcagttcaatatatggaccgcgaacacccct |
52319713 |
T |
|
| Q |
101 |
acttcttgtggtcaaatgacaacaactaagttcaatctagagaagttaaatggcaagaatgatcttcgtctatggcgactcaagacgaaactcatatagt |
200 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52319712 |
acttcttgggg--aaatgacaacaactaagttcaatctagagaagttcaatggcaagaatgattttcgtctatggcgactcaagacgaaactcatatagt |
52319615 |
T |
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| Q |
201 |
tcataaaggtttagcaggtgttttacttggagaaaagaatttaccaactacattttcttatttgaataaaaaagaaat----------------catgct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52319614 |
tcataaaggtttagcaggtgttttacttggagaaaagaatttaccaactacattttcttatttgaataaaaaagaaatcatggagaaagctcatcatgct |
52319515 |
T |
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| Q |
285 |
ctaattttgagttcgggggacaagccaatgaggtaagtttcaaaagaaaaacttg |
339 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52319514 |
ctaattttgagttcgggtgacaagccaatgaggtaagtttcaaaagaaaaacttg |
52319460 |
T |
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