View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14287_low_8 (Length: 344)
Name: NF14287_low_8
Description: NF14287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14287_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 48415942 - 48416244
Alignment:
| Q |
18 |
gaaccatcatcaagggtgagtttctgttcatgataaaggatgttattggccatttcattgtaaggctgcatcagcacacttaagattcaatgctctggtg |
117 |
Q |
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| T |
48415942 |
gaaccatcatcaagggtgagtttctgttcatgataaaggatgttattggccatttcattgtaaggctgcatcagcacacttaagattcaatgctctggtg |
48416041 |
T |
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| Q |
118 |
ctgaaatagtctaaactcaaaactagatgatacaagaaagaatgggaaatactaaatagtacatttgcgtttttggaagactgaaagaaccaagtggact |
217 |
Q |
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| T |
48416042 |
ctgaaatagtctaaactcaaaactagatgatacaagaaagaatgggaaatactaaatagtacatttgcgtttttggaagactgaaagaaccaagtggact |
48416141 |
T |
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| Q |
218 |
aaaagggttgggttggacttcatgttctacttgtacatttgccaatagactagtagtannnnnnnataacttgccgtacttgtttaagtacaagaattta |
317 |
Q |
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| T |
48416142 |
aaaagggttgggttggacttcatgttctacttgtacatttgccaatagactagtagta-ttttttataacttgccgtacttgtttaagtacaagaattta |
48416240 |
T |
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| Q |
318 |
catt |
321 |
Q |
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|||| |
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| T |
48416241 |
catt |
48416244 |
T |
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