View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_high_10 (Length: 257)
Name: NF14288_high_10
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 32778267 - 32778426
Alignment:
| Q |
1 |
aaatgactaactatatatgtaaccattaaagaacactaaatgagttttaagcagaagatctaaaacctgaatctctgaaaattagttttaagcagaagat |
100 |
Q |
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| T |
32778267 |
aaatgactaactatatatgtaaccattaaagaacactaaatgagttttaagcagaagatctaaaacctga-tctctgaaaattagttttaagcagaagat |
32778365 |
T |
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| Q |
101 |
ctaaacgagtttactaaattataatatttgtttatttgtcttttaaaaaattgttatgtca |
161 |
Q |
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| T |
32778366 |
ctaaacgagtttactaaattataatatttgtttatttgtcttttaaaaaattgttatgtca |
32778426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 32778458 - 32778502
Alignment:
| Q |
189 |
tagtgatcatatctgattattctatcacattatcaggtgaaaaac |
233 |
Q |
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| T |
32778458 |
tagtgatcatatctgattattctatcacattatcaggtgaaaaac |
32778502 |
T |
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