View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_high_11 (Length: 219)
Name: NF14288_high_11
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32778072 - 32777869
Alignment:
| Q |
1 |
ctatttatgatttttcttagtaatttgtttaagttccaactatgttttgtnnnnnnn-ctatgttaaatctgataaggtatatttataaaacatgttgta |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32778072 |
ctatttatgatttttcttagtaatttgtttaagttccaactatgttttgtaaaaaaaactatgttaaatctgataaggtatatttataaaacatgctgta |
32777973 |
T |
|
| Q |
100 |
ttaattatgtgtttatgagatagtaatagtgatatatcatataagtgtagttcaattggtagtttcatgaatattaagcacgttttgaactttaaatttt |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32777972 |
ttaattatgtgtttatgagatagttatagtgatatgtcatgtaagtgtagttcaattggtagtttcatgaatattaagcacgttttgaactctaaatttt |
32777873 |
T |
|
| Q |
200 |
tcat |
203 |
Q |
| |
|
|||| |
|
|
| T |
32777872 |
tcat |
32777869 |
T |
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