View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14288_high_2 (Length: 618)
Name: NF14288_high_2
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 36964330 - 36964032
Alignment:
| Q |
1 |
gaaagtccatttgtatctctggtgaagctggaactgttggagagggtgatttgctgcatgtgatttgttaacattataagaaaattagacccttttctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36964330 |
gaaagtccatttgtatctctggtgaagctggaactgttggagagggtgatttgctgcatgtgatttgttaacattataagaaaattagacccttttctct |
36964231 |
T |
|
| Q |
101 |
acatgtgatttgttacatatttacaaattattacaa-accttaagtggtagagtattgcatcattgttaacctcttgaagaagctctttgtgttca---- |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36964230 |
acatgtgatttgttacatatttacaaattattacaataccttgagtggtagagtattgcatcattgttaacctcttgaagaagctctttgtgttcattct |
36964131 |
T |
|
| Q |
196 |
--tcctctgtaatcatcagttcttcaataagaccaattaccacattttacttatcctgataagttcataatcataaaacaagtgattaatcttcaatta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36964130 |
cttcctctgtaatcatcagttcttcaataagaccaattaccacattttacttatcctgataagtacataatcataaaacaagtgattaatcttcaatta |
36964032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 360 - 470
Target Start/End: Complemental strand, 36963964 - 36963858
Alignment:
| Q |
360 |
gatacctgagtgaaattgttggttctgtacaagaaagcacgaatgacagaagcatatgcttctttctcagctgtatgaatgaaagaaagagtcaagctga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36963964 |
gatacctgagtgaaattgttggttctgtacaagaaagcacgaatgacagaagcatatgcttctttctcagctgtatgaatga----aagagtcaagctga |
36963869 |
T |
|
| Q |
460 |
cttataacaat |
470 |
Q |
| |
|
||||||||||| |
|
|
| T |
36963868 |
cttataacaat |
36963858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University