View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_high_6 (Length: 532)
Name: NF14288_high_6
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 36964226 - 36964032
Alignment:
| Q |
19 |
gtgatttgttacatatttacaaattattacaa-accttaagtggtagagtattgcatcattgttaacctcttgaagaagctctttgtgttcat------c |
111 |
Q |
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| T |
36964226 |
gtgatttgttacatatttacaaattattacaataccttgagtggtagagtattgcatcattgttaacctcttgaagaagctctttgtgttcattctcttc |
36964127 |
T |
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| Q |
112 |
ctctgtaatcatcagttcttcaataagaccaattaccacattttacttatcctgataagttcataatcataaaacaagtgattaatcttcaatta |
206 |
Q |
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| T |
36964126 |
ctctgtaatcatcagttcttcaataagaccaattaccacattttacttatcctgataagtacataatcataaaacaagtgattaatcttcaatta |
36964032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 36963964 - 36963858
Alignment:
| Q |
274 |
gatacctgagtgaaattgttggttctgtacaagaaagcacgaatgacagaagcatatgcttctttctcagctgtatgaatgaaagaaagagtcaagctga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36963964 |
gatacctgagtgaaattgttggttctgtacaagaaagcacgaatgacagaagcatatgcttctttctcagctgtatgaatga----aagagtcaagctga |
36963869 |
T |
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| Q |
374 |
cttataacaat |
384 |
Q |
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| T |
36963868 |
cttataacaat |
36963858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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