View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14288_high_7 (Length: 490)

Name: NF14288_high_7
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14288_high_7
NF14288_high_7
[»] chr4 (1 HSPs)
chr4 (9-297)||(32734658-32734946)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 32734946 - 32734658
Alignment:
Q  9 ttataccaaatcttgaccagttgctggagggtacgcctgcaaacattttttctactgtttggtttgaatggagaaagacaaagttctattcaactcatta 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32734946 ttatgccaaatcttgaccagttgctggagggtacgcctgcaaacattttttctactgtttggtttgaatggagaaagacaaagttctattcaactcatta 32734847  T
Q  109 cagtgagcttattcgtcttgcagctttgtataagtaagttttcttggttgcgttggctagtattaataggtattagttgcttaattataattgtaaactg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32734846 cagtgagcttattcgtcttgcagctttgtataagtaagttttcttggttgcgttggctagtattaataggtatcagttgcttaattataattgtaaactg 32734747  T
Q  209 attttgtgtatagatggtgttcactttagctttagtctattagttgactatttatgcagtgtagtcaaatagcggcactctagcgctat 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32734746 attttgtgtatagatggtgttcactttagctttagtctattagttgactatttatgcagtgtagtcaaatagcggcactctagcgctat 32734658  T

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