View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_low_1 (Length: 665)
Name: NF14288_low_1
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 32735045 - 32735691
Alignment:
| Q |
1 |
cccatccttgacaaaactatctttgaagaaatcaagctcaattgtttcagagaaaaccacaacacaagcattaggatgatgaaacagcaaactctcaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32735045 |
cccatccttgacaaaactatctttgaagaaatcaagctcaattgtttcagagaaaaccacaacacaagcattaggatgatgaaacagcaaactctcgaga |
32735144 |
T |
|
| Q |
101 |
ccacgctgataccgaacagtgaacatccaaggaggtgaattccacaccataaaaaccctcatgacacatttaccctttctaaagaatgcatccatgaaat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32735145 |
ccacgctgatatcgaacagtgaacatccaaggaggtgaattccacaccataaaaaccctcatgacacatttaccctttctaaagaatgcatccatgaaat |
32735244 |
T |
|
| Q |
201 |
cattaaacgataaacgcaatggcaattcaggaaaataaccacaattattaccatcagcatatatatgattatcaccattatcattcaatttaaaagttct |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32735245 |
cattgaacgataaacgcaatggcaattcaggaaaataaccccaattattaccatcagcatatatatgattatcaccattatcattcaatttcaaagttct |
32735344 |
T |
|
| Q |
301 |
acgttctgttccacctttagcaacagttactaaatttccattgttattagtatttttatgaactgaatatgaaacttttttgaactcattaatccaccat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32735345 |
acgttctgttccacctttagcaacagttactaaatttccattgttattagtatttttatgaactgaaaatgaaacttttttgaactcattaatccaccat |
32735444 |
T |
|
| Q |
401 |
ttttgaagaactttatcacctctagtgagtgaagaaacaccaactgaatcaggatcttgaagaagaggattaagcattggattaaaagcttcaaaactag |
500 |
Q |
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| T |
32735445 |
ttttgaagaactttatcacctctagtgagtgaagaaacaccaactgaatcaggatcttgaagaagaggattaagcattggattaaaagcttcaaaactag |
32735544 |
T |
|
| Q |
501 |
atttcaacattttatcttttctgagaaaaacacttttcttatcaaaccattcaccccaaatctctctcaaagaaggtgatttgagaagaagcgcatcttc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32735545 |
atttcaacattttatcttttctgagaaaaacacttttcttatcaaaccattcaccccaaatctctctcaaagaaggtgatttgagaagaagcgcgtcttc |
32735644 |
T |
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| Q |
601 |
aattgatgtaatgactgtagcttttcgtcgaacttcgtcgtcgaggg |
647 |
Q |
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| T |
32735645 |
aattgatgtaatgactgtagcttttcgtcgaacttcgtcgtcgaggg |
32735691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 31207799 - 31207729
Alignment:
| Q |
430 |
tgaagaaacaccaactgaatcaggatcttgaagaagaggattaagcattggattaaaagcttcaaaactaga |
501 |
Q |
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|||| |||||| ||||||| || |||||||||||||| ||||||||| |||||||||||||| |||||||| |
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| T |
31207799 |
tgaaaaaacactaactgaagcaagatcttgaagaagatgattaagca-tggattaaaagctttgaaactaga |
31207729 |
T |
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