View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_low_10 (Length: 283)
Name: NF14288_low_10
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 143 - 274
Target Start/End: Complemental strand, 33101044 - 33100913
Alignment:
| Q |
143 |
caaatctaagaaaaataattaaaaccgtgtaattaacaagaaatagtgacaagtgttttagaacaacatagaaaaatacatttcgcatttaaaaataatg |
242 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33101044 |
caaaactaagaaaaataattaaaaccgtgtaattaacaaaaaatagtgacaagtgttttagaacaacatagaaaaatacatttcgcatttaaaaataatg |
33100945 |
T |
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| Q |
243 |
gagcctgcattataacaattgatcagtattat |
274 |
Q |
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| T |
33100944 |
gagcctgcattataacaattgatcagtattat |
33100913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 33101133 - 33101027
Alignment:
| Q |
20 |
gccaccaaactttaacctatttttcaacaaaactttaatcagttttcttgatatcagacccctgagacaacagtcagaagatcaacaatcaaaactaaga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
33101133 |
gccaccaaactttaacctatttttcaacaaaactttgatcacttttcttgatatcagacccctaagacaacagtcggaagatcaacaatcaaaactaaga |
33101034 |
T |
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| Q |
120 |
aaaataa |
126 |
Q |
| |
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||||||| |
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| T |
33101033 |
aaaataa |
33101027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 33101429 - 33101532
Alignment:
| Q |
22 |
caccaaactttaacctatttttcaacaaaactttaatcagttttcttgatatcagacccctgagacaacagtcagaagatcaacaatcaaaactaagaaa |
121 |
Q |
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||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
33101429 |
caccaaactttaacccattttccaacaaaactttgatcacttttcttgatatcagaccc-tgagacaacagtcagaaaatcaacaatcaaaactaagaaa |
33101527 |
T |
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| Q |
122 |
aataa |
126 |
Q |
| |
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||||| |
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|
| T |
33101528 |
aataa |
33101532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 33101515 - 33101638
Alignment:
| Q |
143 |
caaatctaagaaaaataattaaaaccgtgtaattaacaagaaatagtgacaagtgttttagaacaacatagaaaaatacatttcgcatttaaaaataatg |
242 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| ||||| |||| |||| |||||||||||||||||||| |||||| || |||||||||||||||||| |
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| T |
33101515 |
caaaactaagaaaaataattaaaattgtgtaataaacaataaatggtgagaagtgttttagaacaacatataaaaattcaactcgcatttaaaaataatg |
33101614 |
T |
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| Q |
243 |
gagcctgcattataacaattgatc |
266 |
Q |
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||| |||||||||||||||||||| |
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| T |
33101615 |
gagtctgcattataacaattgatc |
33101638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 3035687 - 3035582
Alignment:
| Q |
20 |
gccaccaaactttaacctatttttcaacaaaactttaatcagttttcttgatatcagacccctgagacaacagtcagaagatcaacaatcaaaactaaga |
119 |
Q |
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||||||||||||| ||| |||| |||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3035687 |
gccaccaaactttcacccgttttccaacaaggctttgatcatttttcttcgtatcagacccctgagacaacagtcagaagatcaacaatc-aaactaaga |
3035589 |
T |
|
| Q |
120 |
aaaataa |
126 |
Q |
| |
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||||||| |
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|
| T |
3035588 |
aaaataa |
3035582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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