View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14288_low_2 (Length: 654)

Name: NF14288_low_2
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14288_low_2
NF14288_low_2
[»] chr8 (26 HSPs)
chr8 (19-642)||(36199807-36200430)
chr8 (206-376)||(37684380-37684547)
chr8 (120-376)||(32100962-32101216)
chr8 (19-113)||(36209550-36209644)
chr8 (172-342)||(32927833-32928000)
chr8 (206-289)||(44141077-44141160)
chr8 (20-113)||(36188106-36188199)
chr8 (170-320)||(13384653-13384800)
chr8 (169-288)||(38868435-38868555)
chr8 (206-346)||(16972037-16972174)
chr8 (294-346)||(32736522-32736574)
chr8 (57-117)||(36212010-36212070)
chr8 (572-607)||(36214268-36214303)
chr8 (124-201)||(32994339-32994416)
chr8 (76-117)||(36214305-36214346)
chr8 (208-288)||(4662931-4663011)
chr8 (227-282)||(32994276-32994331)
chr8 (54-113)||(36196427-36196486)
chr8 (227-285)||(7244632-7244690)
chr8 (59-117)||(36190574-36190632)
chr8 (59-117)||(36197997-36198055)
chr8 (71-113)||(36201811-36201853)
chr8 (297-342)||(9461515-9461560)
chr8 (171-288)||(26668492-26668609)
chr8 (332-400)||(29512900-29512969)
chr8 (36-117)||(36184162-36184243)
[»] chr6 (21 HSPs)
chr6 (123-377)||(4910800-4911052)
chr6 (130-401)||(25195283-25195550)
chr6 (182-377)||(3481997-3482190)
chr6 (122-288)||(5724658-5724824)
chr6 (229-377)||(6895891-6896037)
chr6 (170-280)||(765422-765532)
chr6 (205-377)||(16540081-16540251)
chr6 (206-350)||(993933-994074)
chr6 (174-288)||(6654118-6654232)
chr6 (170-282)||(26280544-26280656)
chr6 (220-287)||(852521-852588)
chr6 (158-237)||(6653736-6653815)
chr6 (170-342)||(34620825-34620994)
chr6 (170-342)||(34748262-34748431)
chr6 (294-342)||(3289805-3289852)
chr6 (220-288)||(7952737-7952805)
chr6 (294-346)||(8856367-8856419)
chr6 (206-282)||(10400729-10400805)
chr6 (321-376)||(28929622-28929678)
chr6 (224-288)||(30927036-30927100)
chr6 (248-288)||(34910964-34911004)
[»] scaffold0168 (1 HSPs)
scaffold0168 (122-377)||(31717-31973)
[»] chr4 (27 HSPs)
chr4 (122-342)||(35064953-35065171)
chr4 (123-377)||(33456266-33456516)
chr4 (127-370)||(21691160-21691409)
chr4 (206-289)||(50061655-50061738)
chr4 (409-518)||(43055784-43055893)
chr4 (170-376)||(16551896-16552098)
chr4 (206-337)||(32818352-32818480)
chr4 (229-342)||(8604599-8604709)
chr4 (116-236)||(2635048-2635168)
chr4 (239-376)||(53713504-53713638)
chr4 (251-398)||(45011894-45012039)
chr4 (220-376)||(39733582-39733733)
chr4 (226-289)||(55186989-55187052)
chr4 (226-324)||(14596684-14596781)
chr4 (234-346)||(16643981-16644089)
chr4 (410-528)||(45571278-45571396)
chr4 (173-257)||(25318989-25319074)
chr4 (224-288)||(9134603-9134667)
chr4 (169-289)||(53913604-53913724)
chr4 (261-346)||(4905856-4905938)
chr4 (220-287)||(9064220-9064287)
chr4 (208-282)||(30889764-30889838)
chr4 (227-288)||(30357508-30357569)
chr4 (117-150)||(54705557-54705590)
chr4 (294-342)||(26911784-26911832)
chr4 (298-346)||(33347143-33347191)
chr4 (233-319)||(52965854-52965937)
[»] chr1 (19 HSPs)
chr1 (115-377)||(2099628-2099885)
chr1 (232-377)||(30557505-30557646)
chr1 (227-288)||(7790670-7790731)
chr1 (425-518)||(10871008-10871101)
chr1 (240-376)||(34721782-34721916)
chr1 (261-346)||(34915096-34915178)
chr1 (239-342)||(7524121-7524221)
chr1 (294-346)||(35961428-35961480)
chr1 (207-376)||(38797572-38797738)
chr1 (227-328)||(11049246-11049344)
chr1 (126-288)||(28083916-28084078)
chr1 (229-328)||(3016160-3016256)
chr1 (442-527)||(30036600-30036685)
chr1 (233-398)||(3909863-3910026)
chr1 (124-287)||(6021695-6021860)
chr1 (120-212)||(30557405-30557497)
chr1 (170-282)||(31362239-31362347)
chr1 (226-284)||(50571279-50571337)
chr1 (306-346)||(44786891-44786931)
[»] chr2 (17 HSPs)
chr2 (206-377)||(33019097-33019266)
chr2 (227-356)||(43501121-43501245)
chr2 (407-536)||(43832668-43832797)
chr2 (123-288)||(2002723-2002888)
chr2 (222-357)||(11504024-11504155)
chr2 (408-536)||(1937073-1937201)
chr2 (204-376)||(22535971-22536141)
chr2 (299-377)||(9143040-9143119)
chr2 (123-289)||(30503101-30503267)
chr2 (417-536)||(39867229-39867348)
chr2 (222-342)||(42740968-42741084)
chr2 (206-328)||(10644578-10644697)
chr2 (294-346)||(16518838-16518890)
chr2 (294-391)||(26031962-26032060)
chr2 (303-378)||(13912856-13912932)
chr2 (294-339)||(680270-680315)
chr2 (313-377)||(6074479-6074544)
[»] chr5 (12 HSPs)
chr5 (227-377)||(42858104-42858252)
chr5 (229-346)||(6951278-6951392)
chr5 (224-364)||(38845436-38845574)
chr5 (229-376)||(18851024-18851169)
chr5 (130-288)||(11647981-11648139)
chr5 (220-282)||(9818723-9818785)
chr5 (409-561)||(16958304-16958453)
chr5 (229-342)||(14299328-14299434)
chr5 (407-467)||(19457100-19457160)
chr5 (206-288)||(34250379-34250461)
chr5 (170-282)||(1105378-1105492)
chr5 (227-294)||(18637280-18637349)
[»] chr3 (13 HSPs)
chr3 (124-372)||(25359520-25359765)
chr3 (407-518)||(21505640-21505751)
chr3 (206-362)||(52364026-52364179)
chr3 (123-246)||(38022329-38022451)
chr3 (265-362)||(52141205-52141299)
chr3 (252-339)||(31708219-31708303)
chr3 (176-348)||(40736507-40736677)
chr3 (170-285)||(54596757-54596872)
chr3 (294-378)||(46551207-46551293)
chr3 (176-289)||(47356272-47356385)
chr3 (124-237)||(48410891-48411004)
chr3 (206-246)||(7717391-7717431)
chr3 (170-290)||(44771633-44771753)
[»] chr7 (14 HSPs)
chr7 (261-346)||(42816441-42816523)
chr7 (261-346)||(25156230-25156312)
chr7 (170-347)||(22195803-22195977)
chr7 (208-328)||(35772235-35772352)
chr7 (176-323)||(41386811-41386955)
chr7 (227-287)||(1410958-1411018)
chr7 (294-342)||(32295244-32295292)
chr7 (211-328)||(40491558-40491672)
chr7 (172-282)||(44856843-44856948)
chr7 (204-266)||(40422765-40422828)
chr7 (294-356)||(9480572-9480634)
chr7 (343-396)||(22198192-22198246)
chr7 (343-396)||(22239575-22239629)
chr7 (222-346)||(27571853-27571974)
[»] scaffold0005 (1 HSPs)
scaffold0005 (226-324)||(220597-220694)


Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 19 - 642
Target Start/End: Complemental strand, 36200430 - 36199807
Alignment:
Q  19 ctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcattt-agaattttggatattaatttggagtgtaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36200430 ctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcattttagaattttggatattaatttggagtgtaag 36200331  T
Q  118 attatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36200330 attatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatgtttgcttgctggcaagtagaattgtt 36200231  T
Q  218 tatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcactttta 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200230 tatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcactttta 36200131  T
Q  318 catgaatgtattgaaacacaaatcatttttagtcggaattactttaaccaaaatcaattccccccacctcacaatcaaacacatatgtcaggaacctttc 417  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200130 catgaatgtattgaagcacaaatcatttttagtcagaattactttaaccaaaatcaattccccccacctcacaatcaaacacatatgtcaggaacctttc 36200031  T
Q  418 ttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaaga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36200030 ttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaaga 36199931  T
Q  518 aaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaacagactatgttttgacctgataaataattatgtaattgtataggnnnnnn 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          
T  36199930 aaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaacagactatgttttga-ctgataaataattatgtaattgtataggtttttt 36199832  T
Q  618 nnactatgtagggaatctcaatatt 642  Q
      |||||||||||||||||||||||    
T  36199831 ttactatgtagggaatctcaatatt 36199807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 206 - 376
Target Start/End: Original strand, 37684380 - 37684547
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||||||||| || || ||||||||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||| |  ||   | ||||||||||||    
T  37684380 agtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgca---aaaatttataattc 37684476  T
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattactttaaccaaaatcaatt 376  Q
    || |||||||||||| |||||||  |||||||||||| ||||||||  |||||||| ||||| ||||||||    
T  37684477 aactcacttttacataaatgtatccaaacacaaatcacttttagtcaaaattacttaaaccacaatcaatt 37684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 120 - 376
Target Start/End: Original strand, 32100962 - 32101216
Alignment:
Q  120 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgttta 219  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||   |||||||||||||| |||||| |||| ||  ||  || |||||||| |||    
T  32100962 tatgtgtatgtttggttccacttttagagggactagagttgattctgaatgtgtagaattgattctgacatgtttggttaatgttaactagaattgatta 32101061  T
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 319  Q
    || || ||||| | |||| |||| ||||||  |||||| | |||| ||| || |||| ||||||| |   |   |||||||| ||||| |||||||||||    
T  32101062 tgtcttcagaactaattctacttaaagttagaatttgtagtttttaattttaaaattaattttcata---tacaaatttatagttcaactcacttttaca 32101158  T
Q  320 tgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaatt 376  Q
    | |||||||  | |||||||||| ||||  ||| |||||  |||||||||||||||||    
T  32101159 taaatgtatccacacacaaatcacttttgatcgtaattatttttaaccaaaatcaatt 32101216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 36209644 - 36209550
Alignment:
Q  19 ctgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 113  Q
    ||||||||||||| |||||||||||||  | ||| |||||||||||||||| |||||||||||| ||||||| ||||| ||||||| ||||||||    
T  36209644 ctgttaacaagtcattgtttgctaaatagtataacatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtg 36209550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 342
Target Start/End: Original strand, 32927833 - 32928000
Alignment:
Q  172 gtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 271  Q
    |||||||||| | |||||| |||| |||||  | |||||||||| || |||||| | | ||||||| |||||||| || ||||||| | |||||||| ||    
T  32927833 gtagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 32927932  T
Q  272 gaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    ||||| ||||| |||||     |||||||| ||||| ||||||||||||||||||||  ||||||||||||    
T  32927933 gaattcatttttacacaca---aatttatagttcaactcacttttacatgaatgtatccaaacacaaatca 32928000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 44141160 - 44141077
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 289  Q
    |||||||||| || |||||||| ||||||||| ||||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  44141160 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacat 44141077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 36188199 - 36188106
Alignment:
Q  20 tgttaacaagtcgttgtttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 113  Q
    |||||||||||| | |||||||||||  | ||| |||||||| ||||||  |||||||||||| ||||||||||||| ||||||| ||||||||    
T  36188199 tgttaacaagtcatggtttgctaaatagtataacatattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtg 36188106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 320
Target Start/End: Complemental strand, 13384800 - 13384653
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||||| |||| ||| || | ||| |||||  || |  ||||| ||||||||| | |||||| ||  |||||| | |||||||||    
T  13384800 gtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaatttgtagcttttgattc 13384701  T
Q  270 tagaattgattttcacacatttataatttataattcaattcacttttacat 320  Q
    |||||||||||||||||||     |||||||| ||||| ||||||||||||    
T  13384700 tagaattgattttcacaca---caaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 38868435 - 38868555
Alignment:
Q  169 agtgtagaattgattatgacat-ttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgat 267  Q
    ||||||||||||||| ||| || ||||| ||| || | |||| ||||| | ||||||| | ||||||||| |||||||| || ||||||| | ||||| |    
T  38868435 agtgtagaattgattctgatatattttggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggt 38868534  T
Q  268 tctagaattgattttcacaca 288  Q
    |||| ||||||||||||||||    
T  38868535 tctataattgattttcacaca 38868555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 16972174 - 16972037
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||||||||| || ||||| |||| ||||||  | |||||| ||  |||||| | |||| ||| ||||||||||||| | |||     |||||||  |||    
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacaca---aatttattgttc 16972078  T
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    || ||||||||||||||||||||| ||||||||||||||||    
T  16972077 aaatcacttttacatgaatgtattcaaacacaaatcatttt 16972037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 32736522 - 32736574
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||| |||||    
T  32736522 aatttatagttcaattcacttttacatgaatgtattcaaatacaaattatttt 32736574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 36212070 - 36212010
Alignment:
Q  57 ttgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 117  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| || | |||||||||    
T  36212070 ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaag 36212010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 607
Target Start/End: Complemental strand, 36214303 - 36214268
Alignment:
Q  572 ctatgttttgacctgataaataattatgtaattgta 607  Q
    ||||||||||||||||||||||||||||||||||||    
T  36214303 ctatgttttgacctgataaataattatgtaattgta 36214268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 32994416 - 32994339
Alignment:
Q  124 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgct 201  Q
    ||||||||||||||||||||||||| |  |  | ||||||||||  |||||||||||||||||| || |||| |||||    
T  32994416 tgtatgtttggttccacttctagagaggttgtaattgattctggatgtgtagaattgattatgatatgtttggttgct 32994339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 36214346 - 36214305
Alignment:
Q  76 aaagtttcatttagaattttggatattaatttggagtgtaag 117  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  36214346 aaagtttcatttagaattttggatactgatttggagtgtaag 36214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 4663011 - 4662931
Alignment:
Q  208 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||| || ||| ||| ||||| |||| |||||||| || ||||||| | ||||| |||||||||||||||| |||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacaca 4662931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 32994331 - 32994276
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 282  Q
    ||||||||||| |||||||| |||||||| | | |||||| |||||||||||||||    
T  32994331 agaattgattctacttgaagctatgatttctagcttttgagtctagaattgatttt 32994276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 36196486 - 36196427
Alignment:
Q  54 atattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtg 113  Q
    |||||||||||||||| |||||||| ||| ||||||| ||||  ||||||| ||||||||    
T  36196486 atattgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtg 36196427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7244690 - 7244632
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcac 285  Q
    ||||||||||| |||||||  || ||| ||| | |||||||||||||||||||||||||    
T  7244690 agaattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcac 7244632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 36190632 - 36190574
Alignment:
Q  59 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 117  Q
    |||| |||||| |||||||||||| ||||| ||||||||||||| || | |||||||||    
T  36190632 gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaag 36190574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 36198055 - 36197997
Alignment:
Q  59 gtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 117  Q
    |||| |||||| |||||||||||||||||| || |||||||||| || |||||| ||||    
T  36198055 gtagttgttttattttcaaagtttcatttataaatttggatattgatctggagtttaag 36197997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 36201853 - 36201811
Alignment:
Q  71 ttttcaaagtttcatttagaattttggatattaatttggagtg 113  Q
    |||||||||||||||||||||||||||||| | |||| |||||    
T  36201853 ttttcaaagtttcatttagaattttggataatgattttgagtg 36201811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 9461560 - 9461515
Alignment:
Q  297 ttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    ||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacacaaatca 9461515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 288
Target Start/End: Original strand, 26668492 - 26668609
Alignment:
Q  171 tgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattct 270  Q
    ||||||||||||| | |||| |||| ||  || | |||||||||| || |||||||| ||||||||| |||| ||  ||  |||||| | |||| |||||    
T  26668492 tgtagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattct 26668591  T
Q  271 agaattgattttcacaca 288  Q
    | |||||||| |||||||    
T  26668592 ataattgattctcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 29512900 - 29512969
Alignment:
Q  332 aacacaaatcatttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaacaca 400  Q
    ||||||||||| ||||||||  ||| ||||| ||||||||||||||| || |||| ||||| ||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacaca 29512969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 36184243 - 36184162
Alignment:
Q  36 tttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcatttagaattttggatattaatttggagtgtaag 117  Q
    ||||||||||  | ||| |||||||| ||||||| |||||||||||   |||||||||||| | ||||| || |||||||||    
T  36184243 tttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaactttgagtgtaag 36184162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 123 - 377
Target Start/End: Original strand, 4910800 - 4911052
Alignment:
Q  123 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 222  Q
    |||||||||||||||||||| ||||| || |  | |||||||||   |||||||||||||| |||||| |||| |||  | ||| |||||||| || |||    
T  4910800 gtgtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgc 4910899  T
Q  223 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatga 322  Q
    ||| | ||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||   |   |||||||| ||| | |||||||||||| |    
T  4910900 ctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcaca---tacaaatttatagttcgactcacttttacataa 4910996  T
Q  323 atgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    ||||||  ||||| |||||| |||||||| ||||||| |||||||||||| |||||    
T  4910997 atgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattc 4911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 130 - 401
Target Start/End: Complemental strand, 25195550 - 25195283
Alignment:
Q  130 tttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccaga 229  Q
    |||||||||||||||||||| |    | ||||||||||  ||||| |||||||| |||||| |||| |||||  | |||| ||||| || ||||||| ||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccgga 25195451  T
Q  230 attgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtatt 329  Q
    |||||||| ||||||||    ||||||| | |||| |||||| |||||||||||| |||     |||||| ||||||| |||||||||||| |||||||     
T  25195450 attgattctacttgaagcg--gatttgtagtttttcattctataattgattttcatacaca---aatttacaattcaactcacttttacataaatgtatc 25195356  T
Q  330 gaaacacaaatcatttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaacacat 401  Q
     |||||||||||| ||||| |  |||||||||| ||| ||||||||||| | ||| | ||||| |||||||||    
T  25195355 caaacacaaatcacttttaattagaattactttgaactaaaatcaattctctccaacgcacaaccaaacacat 25195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 3481997 - 3482190
Alignment:
Q  182 ttatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattt 281  Q
    ||||||||| |||| ||| || || ||||||||| || || ||  ||||||||||  ||||||||||| ||||||| |  ||||||| ||||||||||||    
T  3481997 ttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattt 3482096  T
Q  282 tcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 377  Q
    |||||||     | |||||| ||||| | ||||||||||||||||||| |||||||||||| ||||| |  |||| |  ||||||||||||||||||    
T  3482097 tcacaca---caagtttatagttcaacttacttttacatgaatgtattcaaacacaaatcacttttattgagaatcatttttaaccaaaatcaattc 3482190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 5724824 - 5724658
Alignment:
Q  122 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 221  Q
    |||||||||||||||||||||||||||||     | || ||||| | ||||||||||||||| |||||| ||||  ||||  || ||||||||| || ||    
T  5724824 tgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttg 5724725  T
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||| ||||||||| |||||||| || |||||||   |||| |||||| |||||||||| |||||    
T  5724724 cctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 377
Target Start/End: Complemental strand, 6896037 - 6895891
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| || |||||||| ||||||| | |||||||||||||||| |||||| ||||  |||   |||||  | |||||||||||||||||||||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcacacgtat---ttatagataaattcacttttacatgaatgtat 6895941  T
Q  329 tgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 377  Q
      ||| ||||| || ||||||||  |||||  ||||||||||||||||||    
T  6895940 caaaaaacaaaccacttttagtcaaaattagttttaaccaaaatcaattc 6895891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 765532 - 765422
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||| | |||| |||||   |||||||| || || || ||| ||||||||||| |||||||| |||||||||| | |||||||||    
T  765532 gtgtagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattc 765433  T
Q  270 tagaattgatt 280  Q
    |||||||||||    
T  765432 tagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 377
Target Start/End: Original strand, 16540081 - 16540251
Alignment:
Q  205 aagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttata-atttataat 303  Q
    ||||| ||||| || || ||||| ||||||||| |||||||| || ||||||| | |||||||| | ||||||| ||||||    ||| | ||||||| |    
T  16540081 aagtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcac----ttacatatttatagt 16540176  T
Q  304 tcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 377  Q
    | || |||||||||||| |||||||  ||||||||| || || | || |||||||||| ||||||||||||||||    
T  16540177 taaactcacttttacatcaatgtatccaaacacaaaccacttctggttggaattacttctaaccaaaatcaattc 16540251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 993933 - 994074
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||||||||| |||| |||| |||||| |||  ||||||||||||||||| |   |||||||  || |||||||||| | |||| ||    ||||  |||    
T  993933 agtagaattgattatacctcaagaattaattttacttgaagttatgatttttaacttttgatcatataattgatttttaaacatatag---ttattgttc 994029  T
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttttagt 350  Q
    |||||||||||| ||||||||||| ||| |||||||| |||||||    
T  994030 aattcacttttatatgaatgtatttaaatacaaatcagttttagt 994074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 6654232 - 6654118
Alignment:
Q  174 agaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctaga 273  Q
    ||||||||||||| ||| |||| |||||    |||||||||| || | ||| ||||||| |||| |||||||| || ||||||| | |||| ||||||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctaga 6654133  T
Q  274 attgattttcacaca 288  Q
     ||||||||||||||    
T  6654132 tttgattttcacaca 6654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 26280544 - 26280656
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||||| |||| ||| |     ||||||||| || |||||| ||||||||||| |||||||| ||  |||||| | |||||||||    
T  26280544 gtgtagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattc 26280643  T
Q  270 tagaattgatttt 282  Q
     | ||||||||||    
T  26280644 caaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 852521 - 852588
Alignment:
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 287  Q
    |||||||| |||||||||||||||||| ||  | |||| | || ||||||||||||||||||| ||||    
T  852521 tgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 6653736 - 6653815
Alignment:
Q  158 ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattc 237  Q
    ||||||||||  ||||| |||||||| |||| | |||| |||||| |||||||||||| || |||||| | |||||||||    
T  6653736 ttgattctggcggtgtataattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattc 6653815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 342
Target Start/End: Original strand, 34620825 - 34620994
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||||| |||| || ||   || |||||||  || ||||||| |||||||||| || ||||| ||  | |  | | || ||||||    
T  34620825 gtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattc 34620924  T
Q  270 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    ||||||||||||| ||||   || |||||||  ||||| |||||||||||| |||||||  ||||| ||||||    
T  34620925 tagaattgatttttacac---taaaatttatttttcaactcacttttacataaatgtatccaaacataaatca 34620994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 342
Target Start/End: Original strand, 34748262 - 34748431
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||||| |||| || ||   || |||||||  || ||||||| |||||||||| || ||||| ||  | |  | | || ||||||    
T  34748262 gtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattc 34748361  T
Q  270 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    ||||||||||||| ||||   || |||||||  ||||| |||||||||||| |||||||  ||||| ||||||    
T  34748362 tagaattgatttttacac---taaaatttatttttcaactcacttttacataaatgtatccaaacataaatca 34748431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 3289805 - 3289852
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    |||||||||||||| |||||||||||| |||||||  ||||||||||||    
T  3289805 aatttataattcaactcacttttacat-aatgtatccaaacacaaatca 3289852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 7952805 - 7952737
Alignment:
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||| |||| |||| ||||||||  | ||||||| | |||||||||||||||||  |||||||||    
T  7952805 tgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacaca 7952737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 8856367 - 8856419
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||||||  ||||| ||||||| ||||||||||||  ||||||||||||||||    
T  8856367 aatttatgtttcaactcactttcacatgaatgtatccaaacacaaatcatttt 8856419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 282  Q
    ||||||||||||| |||| | |||||| |||| | ||||||||| ||||| | |  |||||||||| ||||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 28929678 - 28929622
Alignment:
Q  321 gaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaatt 376  Q
    ||||||||| |||||||||||||||||||   ||||||  |||||||||||||||||    
T  28929678 gaatgtattcaaacacaaatcatttttagctagaattatttttaaccaaaatcaatt 28929622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 30927036 - 30927100
Alignment:
Q  224 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||||||||  |||||||| || |||| || | |||||||| ||||||||||||| |||||    
T  30927036 tccagaattgattatacttgaagctaagattcgtagcttttgattatagaattgatttttacaca 30927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 34910964 - 34911004
Alignment:
Q  248 tatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||||| | |||||||||||||||||||||| |||||    
T  34910964 tatgatttgtagcttttgattctagaattgattttgacaca 34911004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 122 - 377
Target Start/End: Original strand, 31717 - 31973
Alignment:
Q  122 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 221  Q
    ||||||||||||||||||||||||||| ||    | |||||||| |  |||||||||||||| |||||| |||| ||| || | |||| ||||| || ||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataatt---caattcacttttac 318  Q
    |||||| ||||||||  |||||||| || ||||||| | |||||||| | ||||||||||||||| |  |   ||||||| ||   ||| ||||||||||    
T  31817 cctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcacatacat---atttatagttaaacaactcacttttac 31913  T
Q  319 atgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 377  Q
    || |||||||  ||||||||| || || |||| |||||||||| ||||||||||||||||    
T  31914 ataaatgtatccaaacacaaaccacttctagttggaattacttctaaccaaaatcaattc 31973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 342
Target Start/End: Original strand, 35064953 - 35065171
Alignment:
Q  122 tgtgtatgttt-ggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgttta 219  Q
    ||||||||||| |||||||||||| ||||| ||| |  |||||| |||  |||||||||||||||||||||||||| |||||  | |||||||||| ||     
T  35064953 tgtgtatgttttggttccacttctcgaggg-gtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattt 35065051  T
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 319  Q
    |||||| | ||||||||  |||||||| ||  ||||||   |||||||||||||||||||||| |||||     ||||||||  || | |||||||||||    
T  35065052 tgcctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacaca---caaatttatatctccactcacttttaca 35065148  T
Q  320 tgaatgtattgaaacacaaatca 342  Q
    |||||||||  ||||||||||||    
T  35065149 tgaatgtatccaaacacaaatca 35065171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 123 - 377
Target Start/End: Original strand, 33456266 - 33456516
Alignment:
Q  123 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 222  Q
    ||||||||||||||||||||||||||||| |  | |||||| ||   ||||||||||||||||||||| |||  ||| || | | |||||||| ||  |     
T  33456266 gtgtatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgattatgacatattttgttggtgtcgactagaattgattccgt 33456365  T
Q  223 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatga 322  Q
    ||| |||||| |||| | || ||  |||||||||| | ||||||||||| |||||||||||||| |     ||| |||| |||||||||||||||||  |    
T  33456366 ctctagaatttattctatttaaaactatgatttgtagcttttgattctataattgattttcacata-----aatctatagttcaattcacttttacacaa 33456460  T
Q  323 atgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    | ||||| ||||| |||| | |||| |||  |||||| ||||||||||||||||||    
T  33456461 aagtattcaaacataaataacttttggtcaaaattacttttaaccaaaatcaattc 33456516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 127 - 370
Target Start/End: Complemental strand, 21691409 - 21691160
Alignment:
Q  127 atgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg--------ttt 218  Q
    |||||||||||||||||||||||||   || ||||||||||  |||||||||||||| |||||| |||| ||| || | ||||| ||||        |||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattctactttt 21691310  T
Q  219 atgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttac 318  Q
     || |   |||||||||||||||||||  || ||||||| | ||||| || |||||||||||||||||||     |||||||| |||||  |||||||||    
T  21691309 ttgacagaagaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacaca---caaatttatagttcaacacacttttac 21691213  T
Q  319 atgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaa 370  Q
    |||||| |||  |||||||||||| || ||||| |||| || |||||||||||    
T  21691212 atgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 50061738 - 50061655
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 289  Q
    |||||||||| || |||||||| ||||||||| ||||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  50061738 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacat 50061655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 518
Target Start/End: Original strand, 43055784 - 43055893
Alignment:
Q  409 gaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaatt 508  Q
    ||||||| ||||| | |||||||||||||||| |||||||||| |||||||||||| ||   |||| |||||| |||||| | ||||||| || ||||||    
T  43055784 gaaccttacttttggcatatggaaagaattcccaaaactgggcagaaatgaataaataagagaatgattctaactagaataaagattgataaacaaaatt 43055883  T
Q  509 gagaaaagaa 518  Q
    ||||||||||    
T  43055884 gagaaaagaa 43055893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 170 - 376
Target Start/End: Original strand, 16551896 - 16552098
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||||||||| |||||| | || |||||| | | ||||  || || |||||| || || |||||  ||||||| || ||||||| | ||||  |||    
T  16551896 gtgtagaattgattctgacatgtatggttgctgtcgaatagagctgattctgcctctaggatggattctccttgaagctaggatttgtagtttttagttc 16551995  T
Q  270 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaa 368  Q
    |||||||||||||||||||     |||||||| ||||| ||||||||||||||||||||  || | |||||||  |||| ||  |||||| |||||||||    
T  16551996 tagaattgattttcacaca-----aatttatagttcaactcacttttacatgaatgtatccaatctcaaatcacgtttaatcataattacttttaaccaa 16552090  T
Q  369 aatcaatt 376  Q
    ||||||||    
T  16552091 aatcaatt 16552098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 206 - 337
Target Start/End: Complemental strand, 32818480 - 32818352
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttataatttataat 303  Q
    |||||||||| || |||||||||||||||||| | |||||| ||  |||||| | ||||||||||||||||||||||  ||||||     |||||||| |    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacaca-----aatttatagt 32818386  T
Q  304 tcaattcacttttacatgaatgtattgaaacaca 337  Q
    |||| | ||||||||||||||||||  |||||||    
T  32818385 tcaactaacttttacatgaatgtatccaaacaca 32818352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 8604709 - 8604599
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| |||||||| || ||||||| | ||| ||||||||||||||||||||||||     |||||||| || ||| |||||||||||||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacaca---caaatttatagttgaatgcacttttacatgaatgtat 8604613  T
Q  329 tgaaacacaaatca 342  Q
      ||||| ||||||    
T  8604612 ccaaacataaatca 8604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 2635048 - 2635168
Alignment:
Q  116 agattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg 215  Q
    |||||| |||||||||||||| ||||| ||||||||    | |||||||| | |||||| |||||||| |||||| |||| |||||   |||||||| ||    
T  2635048 agattaagtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactg 2635147  T
Q  216 tttatgcctccagaattgatt 236  Q
     || |||||||||||||||||    
T  2635148 attttgcctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 53713638 - 53713504
Alignment:
Q  239 acttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaa 338  Q
    |||||||| || ||||||| | ||||||||||| |||||| || |||| |  ||||   |||| ||||| |||||||||||||||||| |  ||||||||    
T  53713638 acttgaagctacgatttgtagcttttgattctataattgacttccacataaatata---tatagttcaactcacttttacatgaatgtgtccaaacacaa 53713542  T
Q  339 atcatttttagtcggaattactttaaccaaaatcaatt 376  Q
    || || |||||||  ||||||||| | |||||||||||    
T  53713541 attatgtttagtcaaaattacttttaacaaaatcaatt 53713504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 251 - 398
Target Start/End: Original strand, 45011894 - 45012039
Alignment:
Q  251 gatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagt 350  Q
    ||||||| | ||||||||||||||||||||||||||||     |||||||||||  | ||||||||| ||||||||||| |||| |||| || |||||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacaca---caaatttataattttactcacttttatatgaatgtattcaaacccaaaccacttttagt 45011990  T
Q  351 cggaattac-tttaaccaaaatcaattccccccacctcacaatcaaaca 398  Q
      |||| || ||||| | |||| ||||| | || || ||||||||||||    
T  45011991 gagaatcacttttaatcgaaataaattctcaccgccgcacaatcaaaca 45012039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 376
Target Start/End: Complemental strand, 39733733 - 39733582
Alignment:
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 319  Q
    |||||||| ||||||||| |||||| ||||  |||||| | |||||||| ||||||||||| |||||||      ||||| | ||||| ||  |||| ||    
T  39733733 tgcctccataattgattctacttga-gttacaatttgtagcttttgattgtagaattgattatcacacac-----atttaaagttcaactccttttttca 39733640  T
Q  320 tgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaatt 376  Q
    | |||||||  |||||||||||| ||||| || ||||||| |||||||||||||||||    
T  39733639 taaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 55187052 - 55186989
Alignment:
Q  226 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 289  Q
    |||||||||||| ||||||||||| |||||||   |||| ||| ||||||||||||||||||||    
T  55187052 cagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacat 55186989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 324
Target Start/End: Original strand, 14596684 - 14596781
Alignment:
Q  226 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaat 324  Q
    |||||||||||| |||||||| |||| ||||  | |||||||||||||||||||||| | | |   | |||||||| ||||||||||||||| ||||||    
T  14596684 cagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagata-caaaaatttatagttcaattcacttttatatgaat 14596781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 16643981 - 16644089
Alignment:
Q  234 attcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaa 333  Q
    |||| |||||||| ||| |||| | |||||||||||||||||||||||| ||| ||    ||| ||| | |||||||||| ||| ||||||||||| |||    
T  16643981 attctacttgaagctataatttatagattttgattctagaattgatttttacatat---aaatatatca-tcaattcactattatatgaatgtattcaaa 16644076  T
Q  334 cacaaatcatttt 346  Q
    || ||||||||||    
T  16644077 cataaatcatttt 16644089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 45571278 - 45571396
Alignment:
Q  410 aacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattg 509  Q
    |||||||||||| |||||||||||   || | ||||| |||| || ||||||| ||||   ||||  ||||| ||| |||| |||||||||| |||||||    
T  45571278 aacctttcttttggtatatggaaattttttccaaaacagggcagacatgaatagacaatagaatgactctaactaggatgaagattgatcaacaaaattg 45571377  T
Q  510 agaaaagaaaatttctttt 528  Q
    ||||||||| |||| ||||    
T  45571378 agaaaagaagatttttttt 45571396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 25318989 - 25319074
Alignment:
Q  173 tagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattc-aacttgaagttatgatttgt 257  Q
    ||||||||||| |||||| |||| |||||  | |||||||||| || || ||||||||||||||| ||||||||| || |||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgt 25319074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 9134603 - 9134667
Alignment:
Q  224 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||||||| | |||||||| ||  |||||| | |||||||| |||||||||||||||||||    
T  9134603 tccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 53913724 - 53913604
Alignment:
Q  169 agtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgatt 268  Q
    ||||| |||||||||  ||||| |||| ||| || | |||||||||| || |||||  | ||||||||  |||| ||| |||||||| ||  || |||||    
T  53913724 agtgttgaattgattccgacatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgatt 53913625  T
Q  269 ctagaattgattttcacacat 289  Q
    ||| |||||||||||||||||    
T  53913624 ctataattgattttcacacat 53913604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 4905938 - 4905856
Alignment:
Q  261 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    ||||||||| |||||||||||| | |||   | |||||| | |||||| ||||||||||| |||||||| |||||||||| |||||    
T  4905938 ttttgattcaagaattgatttttaaaca---agaatttacagttcaatccacttttacataaatgtattcaaacacaaattatttt 4905856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 9064220 - 9064287
Alignment:
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 287  Q
    |||| ||| ||||||||| |||||||  ||  |||||| | |||||||||||||||||||||||||||    
T  9064220 tgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacac 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  208 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 282  Q
    |||||||| || || ||| ||||||||||| ||||| | ||| |||||||  ||||||||| |||||||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 30357508 - 30357569
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    ||||||||||| |||||||| | |||||||| | |||||||| || |||||||||| |||||    
T  30357508 agaattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacaca 30357569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 54705590 - 54705557
Alignment:
Q  117 gattatgtgtatgtttggttccacttctagaggg 150  Q
    |||| |||||||||||||||||||||||||||||    
T  54705590 gattttgtgtatgtttggttccacttctagaggg 54705557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 26911832 - 26911784
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    |||||||| || |||||||||||||||||||||||  | ||||||||||    
T  26911832 aatttatagtttaattcacttttacatgaatgtatacacacacaaatca 26911784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 33347191 - 33347143
Alignment:
Q  298 tataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||| |||||||||||||||||||| |||||| ||||| |||| |||||    
T  33347191 tatagttcaattcacttttacatgattgtattcaaacaaaaattatttt 33347143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 52965937 - 52965854
Alignment:
Q  233 gattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttaca 319  Q
    ||||| |||||||||||  |||| | | ||||||||||| |||||||| | ||||||    |||||||||||||| |||||||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacata---aatttataattcaactcacttttaca 52965854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 115 - 377
Target Start/End: Complemental strand, 2099885 - 2099628
Alignment:
Q  115 aagattatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaatt 214  Q
    ||||||| ||| ||||||||||||  |||||||||   | || ||||||||||  ||||||||||||||||||| | |||| ||| || | |||||||||    
T  2099885 aagattaagtgaatgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgacttgtttgattgatgtcgagtagaatt 2099788  T
Q  215 gtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattca-ct 313  Q
    | || |  ||||||||||||||  | |||||| |  ||||||| ||||||| || ||||||||||||||||||||    ||||||||  |||| |||  |    
T  2099787 gattgt--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacat---aaatttatagctcaactcattt 2099693  T
Q  314 tttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    |||| ||||||||||  |||||||||||| ||||| ||  |||||| ||||||||||||||||||    
T  2099692 tttatatgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattc 2099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 30557505 - 30557646
Alignment:
Q  232 tgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattga 331  Q
    |||||| | |||||| || ||||||| | ||||||||||||||||||||||||||||     |||||||| ||||| ||||||||| ||||||||||  |    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacaca-----aatttatagttcaactcacttttatatgaatgtatcca 30557599  T
Q  332 aacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    ||||||||||| || ||||| || | || ||||||||||||||||||    
T  30557600 aacacaaatcacttctagtcagagtcacttttaaccaaaatcaattc 30557646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 7790731 - 7790670
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |||||    
T  7790731 agaattgattctacttgaagttatgatttgtagatttagattctataattgatttttacaca 7790670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 518
Target Start/End: Complemental strand, 10871101 - 10871008
Alignment:
Q  425 atatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaa 518  Q
    |||||||||||||||| |||||| ||| |||||||||||||||   |||  ||| || || ||| | |||||||||||||||||||||||||||    
T  10871101 atatggaaagaattcccaaaacttggcagaaatgaataaacaagagaataattccaactaaaataaagattgatcaataaaattgagaaaagaa 10871008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 34721916 - 34721782
Alignment:
Q  240 cttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaa 339  Q
    |||||||||| ||||||| | |||| |||||| ||||||||||||||||     |||||||| ||| | | |||||||||| |||||||| ||| |||||    
T  34721916 cttgaagttaggatttgttgttttttattctataattgattttcacaca---caaatttatagttcgacttacttttacatcaatgtattcaaatacaaa 34721820  T
Q  340 tcatttttagtcggaattac-tttaaccaaaatcaatt 376  Q
    ||| |||| ||   |||||| |||||||||||||||||    
T  34721819 tcacttttggtttcaattacttttaaccaaaatcaatt 34721782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 34915096 - 34915178
Alignment:
Q  261 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||||||||||||||||||| | |||||     | |||||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  34915096 ttttgattctagaattgattctaacacacc---attttataattcaactcacttttacatgaatgtattcaaacataaatcatttt 34915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 7524121 - 7524221
Alignment:
Q  239 acttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaa 338  Q
    ||||||||||| ||||||| | |||||||| ||||||||||||| |||||     |||||||| ||||| |||||||||||| ||||| |  ||||||||    
T  7524121 acttgaagttaggatttgtagcttttgattatagaattgatttttacaca---caaatttatagttcaactcacttttacataaatgtgtccaaacacaa 7524217  T
Q  339 atca 342  Q
    ||||    
T  7524218 atca 7524221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 35961428 - 35961480
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||||| ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  35961428 aatttaaaattcaactcacttttacatgaatgtatagaaacataaatcatttt 35961480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 376
Target Start/End: Complemental strand, 38797738 - 38797572
Alignment:
Q  207 gtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattca 306  Q
    ||||||||| ||||||||||  ||||||||  |||||||||||||||||||   || | | || ||||||||||||||||||     |||||||| ||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacaca---caaatttatagttca 38797642  T
Q  307 attcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaatt 376  Q
    | ||||||||| || |||||||  ||||| |||||| ||||| ||  | |||  |||||||||||||||||    
T  38797641 actcacttttaaat-aatgtatgcaaacataaatcacttttaatcaaatttatttttaaccaaaatcaatt 38797572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 11049246 - 11049344
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 326  Q
    ||||| ||||| |||||||| || ||||||| | ||||||||||| |||||||||| |||||     |||||||| ||||| |||||||||| |||||||    
T  11049246 agaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacaca---caaatttatagttcaagtcacttttacgtgaatgt 11049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 288
Target Start/End: Complemental strand, 28084078 - 28083916
Alignment:
Q  126 tatgtttggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcct 224  Q
    |||||||| ||||||||||||||| || | |  |||| ||||| ||||||||||||||| |||||| |||| ||| |  | |||||||||| || || ||    
T  28084078 tatgtttgattccacttctagagg-agccaaaattgactctggtagtgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtct 28083980  T
Q  225 ccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
     |  ||||||||| |||||||| ||  |||||| | ||||||||||| |||| ||||| |||||    
T  28083979 tcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacaca 28083916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 3016160 - 3016256
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| ||||||| |||  |||||| | ||||||||||||||||||| || ||||||    ||||||   ||||| ||||||||||||||||||||    
T  3016160 aattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacat---aaatttacggttcaactcacttttacatgaatgtat 3016256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 527
Target Start/End: Original strand, 30036600 - 30036685
Alignment:
Q  442 aaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttt 527  Q
    |||||| ||| ||||||||||||| |   |||| |||||| |||||| | |||||||||| |||||||||||||||| | ||||||    
T  30036600 aaaacttggcagaaatgaataaactagagaatgattctaaatagaataaagattgatcaaaaaaattgagaaaagaagaattcttt 30036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 398
Target Start/End: Original strand, 3909863 - 3910026
Alignment:
Q  233 gattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaa 332  Q
    |||||| |||||||||| ||| ||| |||||| ||| |||||||||||||||||||     |||| ||| || || |||| |||||| |||| |||| ||    
T  3909863 gattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca---caaattcatactttaactcacgtttacacgaatctattcaa 3909959  T
Q  333 acacaaatcatttttagtcggaattac-tttaaccaaaatcaattccccccacctcacaatcaaaca 398  Q
    | |||||| | |||||||  |||| || ||||| ||| |||||||||||| | | ||||| ||||||    
T  3909960 atacaaattacttttagttagaatcacttttaatcaatatcaattccccctatcgcacaaccaaaca 3910026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 287
Target Start/End: Original strand, 6021695 - 6021860
Alignment:
Q  124 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaat---tgattatgacatttttgcttgctggcaagtagaattgtttat 220  Q
    ||||||||||||||||||| | |||| |||  | |||||||| |  |||||||||   ||||| |||||  |||| ||| |  |||||||||||| || |    
T  6021695 tgtatgtttggttccacttttggagg-agttaaattgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T
Q  221 gcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 287  Q
    ||||| ||||| ||||| |||||||| || ||| ||| | ||||||||||| ||| |||||| ||||    
T  6021794 gcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacac 6021860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 30557405 - 30557497
Alignment:
Q  120 tatgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaa 212  Q
    |||||||| ||||||| ||||||||| | ||| | || ||||||||||  |||||||||||||| |||||| |||| || ||| | |||||||    
T  30557405 tatgtgtaagtttggtcccacttctacaaggactagaattgattctggaggtgtagaattgattctgacatgtttggttactgccgagtagaa 30557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 31362347 - 31362239
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    ||||||||| || | | |||| |||| |||||  || ||||||||| || |||||||| |||||||||    ||||||||  |||||| | |||||||||    
T  31362347 gtgtagaatcgactctaacatgtttggttgctttcatgtagaattgattttgcctccataattgattc----tgaagttagaatttgtagcttttgattc 31362252  T
Q  270 tagaattgatttt 282  Q
    |||||||||||||    
T  31362251 tagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 50571279 - 50571337
Alignment:
Q  226 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttca 284  Q
    |||||||||||| ||||||||||| ||||||| | |||| ||||||||| |||| ||||    
T  50571279 cagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttca 50571337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 44786931 - 44786891
Alignment:
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    ||||||||||||||||||||||||  |||| ||||||||||    
T  44786931 aattcacttttacatgaatgtattcgaacataaatcatttt 44786891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 206 - 377
Target Start/End: Complemental strand, 33019266 - 33019097
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||| ||||| || |||||| ||||||||||  | |||||| ||  |||||| | ||||| || ||||||||||||||||||||    |||||||| |||    
T  33019266 agtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacata---aatttatagttc 33019170  T
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    || ||||||||||||||||| ||  |||||||||||| |||||||| |||| || ||||||||||||||||||    
T  33019169 aactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattc 33019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 43501121 - 43501245
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 326  Q
    ||||||||||| |||||||  || ||||||| | |||||||| ||||||||||| | |||||     || ||||||||||| ||| ||||||||||||||    
T  43501121 agaattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacaca-----aaattataattcaactcagttttacatgaatgt 43501215  T
Q  327 attgaaacacaaatcatttttagtcggaat 356  Q
    ||  |||||||||||| |||||||| ||||    
T  43501216 atacaaacacaaatcacttttagtcagaat 43501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 536
Target Start/End: Original strand, 43832668 - 43832797
Alignment:
Q  407 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaa 506  Q
    |||||||||||||||  ||||||||||||||||  ||||||| || ||  |||||||||||   |||| |||||| |||||| | ||||||||||  |||    
T  43832668 aggaacctttcttttgatatatggaaagaattctcaaaactgagcagatttgaataaacaagagaatgattctaactagaataaagattgatcaacgaaa 43832767  T
Q  507 ttgagaaaagaaaatttcttttgatatctt 536  Q
    |||||||||||| | ||||||  |||||||    
T  43832768 ttgagaaaagaagaattctttcaatatctt 43832797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 288
Target Start/End: Complemental strand, 2002888 - 2002723
Alignment:
Q  123 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 222  Q
    |||||||||||||||| |||| | ||||  |  |||||||||| |  | |||||||||||  ||||||  ||| |||||  | |||||||||| || |||    
T  2002888 gtgtatgtttggttccccttccacaggggttaaagttgattctagaggagtagaattgatgttgacatacttggttgctttctagtagaattgattttgc 2002789  T
Q  223 ctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||  |||||| |||||||| || ||||||| | |||| |||||| |||||||||| |||||    
T  2002788 ctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 357
Target Start/End: Complemental strand, 11504155 - 11504024
Alignment:
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 321  Q
    |||||| ||||||||| ||   |||||| ||||||| | |||||||| |||||||| ||||||||||     || ||||| ||||| |||||||||||||    
T  11504155 cctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttcacacaca---aagttatagttcaactcacttttacatg 11504060  T
Q  322 aatgtattgaaacacaaatcatttttagtcggaatt 357  Q
    |||||||| |||||||||||| ||||| ||| ||||    
T  11504059 aatgtattaaaacacaaatcacttttaatcgaaatt 11504024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 408 - 536
Target Start/End: Complemental strand, 1937201 - 1937073
Alignment:
Q  408 ggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaat 507  Q
    |||||||||||||| |||| | |||| |||| |  ||||||||| ||| |||||||||||   || |||||||| |||||| | |||||||||| |||||    
T  1937201 ggaacctttcttttggtatgttgaaataatttcctaaactgggcagaagtgaataaacaagagaacggttctaactagaataaagattgatcaacaaaat 1937102  T
Q  508 tgagaaaagaaaatttcttttgatatctt 536  Q
    ||||||| ||| | ||||||  |||||||    
T  1937101 tgagaaacgaagagttctttgaatatctt 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 22535971 - 22536141
Alignment:
Q  204 caagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttataatttata 301  Q
    |||||||||||| || |||||  ||||||||||| ||||||| |||  |||||  | |||||||| ||||||| |||||  |||||||     |||||||    
T  22535971 caagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacat-----atttata 22536065  T
Q  302 attcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt-aaccaaaatcaatt 376  Q
     || || ||| |||||||| |||||||  |||||||||||| |||||||  ||| |||||| ||||||||||||||    
T  22536066 gttaaactcatttttacataaatgtatccaaacacaaatcacttttagttagaaatactttcaaccaaaatcaatt 22536141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 9143040 - 9143119
Alignment:
Q  299 ataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaattc 377  Q
    ||||||||| |||| |||||||||||||||| ||||| ||| |||||||||||  |||||| |||||| |||||||||||    
T  9143040 ataattcaactcacatttacatgaatgtattcaaacaaaaaccatttttagtcaaaattacatttaactaaaatcaattc 9143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 289
Target Start/End: Original strand, 30503101 - 30503267
Alignment:
Q  123 gtgtatgtttggttccacttctagagggagtcgag-ttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatg 221  Q
    ||||||| ||||||||||||||| |||| ||| |  |||||| ||| ||||||||||||||| | |||| || | ||| |  |||| |||| || || ||    
T  30503101 gtgtatgcttggttccacttctaaaggg-gtcaaaattgattttggaagtgtagaattgattctaacatgttcgattgatttcaagaagaaatgattttg 30503199  T
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 289  Q
    |||||| ||||||||| ||||||||  | |||| || | ||||||||| |||||||||||| ||||||    
T  30503200 cctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 536
Target Start/End: Original strand, 39867229 - 39867348
Alignment:
Q  417 cttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaattgagaaaag 516  Q
    ||||| |||||||||||||||||| ||||||| || ||  | |||||||||   |||| |||||| |||||| | ||||||||||  |||||||||||||    
T  39867229 cttttggtatatggaaagaattcccaaaactgagcagattttaataaacaagagaatgattctaactagaataaagattgatcaacgaaattgagaaaag 39867328  T
Q  517 aaaatttcttttgatatctt 536  Q
    || | ||||||  |||||||    
T  39867329 aagaattctttcaatatctt 39867348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 42740968 - 42741084
Alignment:
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 321  Q
    |||||| ||||||||| |||||||| || ||||||| | |||||||||||||||||||||| ||||   |  ||||||   | ||| ||||||||||||     
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac---tcaaatttactgtccaactcacttttacat- 42741063  T
Q  322 aatgtattgaaacacaaatca 342  Q
    |||||||| ||||||||||||    
T  42741064 aatgtattcaaacacaaatca 42741084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 10644578 - 10644697
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||||||||| || |||||||| |||| |||| ||||||||||| ||||||| | |||| ||| ||||||| | ||||| ||||    |||||||| |||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacat---aaatttatagttc 10644674  T
Q  306 aattcacttttacatgaatgtat 328  Q
    || ||||||||| || |||||||    
T  10644675 aactcacttttatataaatgtat 10644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 16518838 - 16518890
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||||||| ||||| ||||||||||||||||||||  ||||||||||||||||    
T  16518838 aatttatagttcaactcacttttacatgaatgtatccaaacacaaatcatttt 16518890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 26032060 - 26031962
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattccccccacctcacaa 391  Q
    |||||||| ||||| |||||||||||   ||||||| | |||||||| ||||||||||  ||| |  |||||| ||||||||||| |||||||||||||    
T  26032060 aatttatacttcaactcacttttacacatatgtattcacacacaaatgatttttagtcaaaatcatttttaactaaaatcaattctccccacctcacaa 26031962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 13912856 - 13912932
Alignment:
Q  303 ttcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaatt-actttaaccaaaatcaattcc 378  Q
    ||||| ||| |||||||||| |||||  |||||||||||| |||| ||| ||||| | |||||||||||||||||||    
T  13912856 ttcaactcatttttacatgattgtatccaaacacaaatcactttttgtcagaattaattttaaccaaaatcaattcc 13912932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 680315 - 680270
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaa 339  Q
    |||||| ||||||| ||||||||||||||||||||  |||||||||    
T  680315 aatttagaattcaactcacttttacatgaatgtatgcaaacacaaa 680270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 6074544 - 6074479
Alignment:
Q  313 ttttacatgaatgtattgaaacacaaatcatttttagtcggaattactt-taaccaaaatcaattc 377  Q
    ||||||||||||||||  ||| | |||| |||||||||| |||| |||| ||||||||||||||||    
T  6074544 ttttacatgaatgtatccaaataaaaattatttttagtcagaatgacttctaaccaaaatcaattc 6074479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 227 - 377
Target Start/End: Original strand, 42858104 - 42858252
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgt 326  Q
    ||||||||||  ||||||||||| ||||||  | |||| |||||| ||||||||||||||||     |||||||| ||||| |||||||||||||||| |    
T  42858104 agaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacaca---aatttatagttcaactcacttttacatgaattt 42858200  T
Q  327 attgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatcaattc 377  Q
    ||| ||||||| |||| |||||||| |||| |  ||||||||||||||||||    
T  42858201 attcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattc 42858252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 346
Target Start/End: Complemental strand, 6951392 - 6951278
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||| |||||||||  ||||||    ||||||||||||||||||||||||||||||| |||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacata---aatttataattcaattcacttttacatgaatttat 6951296  T
Q  329 tgaaacacaaatcatttt 346  Q
      ||| |||| |||||||    
T  6951295 ccaaatacaagtcatttt 6951278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 224 - 364
Target Start/End: Original strand, 38845436 - 38845574
Alignment:
Q  224 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcac-ttttacatga 322  Q
    |||| ||||||||| |||||||| || ||||||| | ||||||||||||||||||||||||||||     ||| |||| || || |||| ||||||||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacaca---caaatatatagttaaactcactttttacatga 38845532  T
Q  323 atgtattgaaacacaaatcatttttagtcggaattactttaa 364  Q
    || |||  |||||||||||||||||||||  |||||||||||    
T  38845533 atatatccaaacacaaatcatttttagtcataattactttaa 38845574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 18851169 - 18851024
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| |||||||| |||||||||| | |||||||| |||||||||||||||||||  |   ||||||| || || |||||||||||||||  |||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacat---atttatagttaaactcacttttacatgaagttat 18851073  T
Q  329 tgaaacacaaatcatttttagtcggaattac-tttaaccaaaatcaatt 376  Q
      ||||||||| ||  |||||||  |||||| |||||||||||||||||    
T  18851072 ccaaacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  130 tttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccaga 229  Q
    ||||| ||||||||||||||||    | |||||| |||  ||||| |||||||| |||||| |||| |||||| | |||||||||  |||||| |  | |    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaa 11648080  T
Q  230 attgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||| |||||||| || |||||||  ||||||||| || ||||||||||||||||    
T  11648081 attgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 9818723 - 9818785
Alignment:
Q  220 tgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 282  Q
    |||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  9818723 tgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 561
Target Start/End: Complemental strand, 16958453 - 16958304
Alignment:
Q  409 gaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaatt 508  Q
    ||||||||||||| |||||  ||||| ||||| ||||  |||| |||||| ||| |||   ||||| |||||| |||||| | |||||||||  ||||||    
T  16958453 gaacctttcttttggtata--gaaagtattcccaaaatcgggctgaaatggatacacacgataatgattctaactagaataaagattgatcagcaaaatt 16958356  T
Q  509 gagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggata 561  Q
    |||||||||| | ||||||  ||||||| |||| | |||||||||||||||||    
T  16958355 gagaaaagaagaattctttgaatatctt-tgttattatcaattgaatgggata 16958304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 342
Target Start/End: Original strand, 14299328 - 14299434
Alignment:
Q  229 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtat 328  Q
    ||||||||| ||||||||||| ||||||| | |||| |||||||||||| |||||||||||    |||||||| ||| |||||| |||||||   |||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacat---aaatttatagttcgattcac-tttacat---tgtat 14299420  T
Q  329 tgaaacacaaatca 342  Q
    | ||||||||||||    
T  14299421 tcaaacacaaatca 14299434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 467
Target Start/End: Complemental strand, 19457160 - 19457100
Alignment:
Q  407 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaa 467  Q
    ||||| ||||||||| |||||| ||||||||| | |||||||||| |||||||||||||||    
T  19457160 aggaagctttcttttggtatattgaaagaatttccaaaactgggcagaaatgaataaacaa 19457100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacaca 288  Q
    |||||||||| ||||||||| ||||||||||| |||||| | ||  | |||| | ||||||||||| ||||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 1105378 - 1105492
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattga-ttcaacttgaagttatgatttgtcgattttga-t 267  Q
    ||||| |||||||| |||||||||||  || |  |||||||||||| || ||| | || |||||| || |||| ||||||||||||||| | |||||| |    
T  1105378 gtgtataattgattttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgact 1105477  T
Q  268 tctagaattgatttt 282  Q
    |||| ||||||||||    
T  1105478 tctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 18637280 - 18637349
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt--cacacatttata 294  Q
    ||||||||||| |||||||| || |||  || | ||||||||||||||||||||||  ||||||||||||    
T  18637280 agaattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacacatttata 18637349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 124 - 372
Target Start/End: Complemental strand, 25359765 - 25359520
Alignment:
Q  124 tgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcc 223  Q
    ||||||||||||||||||| ||||| |    || |||||| |||  || |||||||| || |  ||| |||| |||||| ||| || ||||| || ||||    
T  25359765 tgtatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaata-aattgattctgcc 25359667  T
Q  224 tccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaa 323  Q
    |||||||||||||| |||||||||||  |||||| | |||| |||||| ||||||||||||||||  |   ||||||  || || |||||| || |||||    
T  25359666 tccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacat---atttattgttaaaatcacttctatatgaa 25359570  T
Q  324 tgtattgaaacacaaatcatttttagtcggaatta-ctttaaccaaaatc 372  Q
    |||||  |||||||||||| |||| ||| ||||||  |||||||||||||    
T  25359569 tgtatccaaacacaaatcactttttgtcagaattatttttaaccaaaatc 25359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 21505640 - 21505751
Alignment:
Q  407 aggaacctttcttttagtatatggaaagaattcctaaaactgggcggaaatgaataaacaaagtaatggttctaattagaatgatgattgatcaataaaa 506  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||     |||  |||||  |||||| | | |||||||| ||||    
T  21505640 aggaacctttcttttggtatatggaaagaattcccaaaactgggcagaaatgaataaactgcagaataattctagctagaataaaggttgatcaacaaaa 21505739  T
Q  507 ttgagaaaagaa 518  Q
    ||||||||||||    
T  21505740 ttgagaaaagaa 21505751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 52364026 - 52364179
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattc 305  Q
    |||||||||  | |||| || ||||||| ||| |||||||| |||||||| | | ||||||||||| |||||||||||| ||||    |||||| | |||    
T  52364026 agtagaattaatcatgcatcgagaattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacat---aaatttacagttc 52364122  T
Q  306 aattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt 362  Q
    || |||||||||||| ||  |||| |||||||||||| ||||| |  ||||||||||    
T  52364123 aactcacttttacataaaattatttaaacacaaatcaattttaattagaattacttt 52364179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 38022329 - 38022451
Alignment:
Q  123 gtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattg-tttatg 221  Q
    |||||||||||||| |||||||||| |||    |||||||||| | ||||||||||||||| || ||| |||| |||||  |||||||||||| ||| ||    
T  38022329 gtgtatgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgct--caagtagaattgatttttg 38022426  T
Q  222 cctccagaattgattcaacttgaag 246  Q
    |||||| ||||||||| || |||||    
T  38022427 cctccaaaattgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 52141299 - 52141205
Alignment:
Q  265 gattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaattacttt 362  Q
    |||||||||||| |||||||||||   |||||| ||| ||||| ||||||||| ||||||||||| |||||||||  | |||||||| ||||||||||    
T  52141299 gattctagaattaattttcacacac--ataatt-atagttcaactcacttttatatgaatgtatttaaacacaaactacttttagtcagaattacttt 52141205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 31708303 - 31708219
Alignment:
Q  252 atttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaa 339  Q
    |||||| | |||||||||||||||||||| | |||||     |||||||||||||| ||||||||||||||||||||  |||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacaca---aatttataattcaactcacttttacatgaatgtatccaaacacaaa 31708219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 348
Target Start/End: Complemental strand, 40736677 - 40736507
Alignment:
Q  176 aattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaat 275  Q
    |||||||| |||| | |||| ||| || | |||| ||||| || ||| |||  ||||||||| |||||||  ||| |||||||| |||||||||||| ||    
T  40736677 aattgattttgacgtgtttgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctag-at 40736579  T
Q  276 tgattttcacacatttataatttataattcaattcacttttacatga--atgtattgaaacacaaatcattttta 348  Q
    | |||||||||||     |||||||||||||||| | ||||| || |  ||||||| ||||||||||||||||||    
T  40736578 taattttcacaca---caaatttataattcaattaatttttatattaatatgtattcaaacacaaatcattttta 40736507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 54596757 - 54596872
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    ||||| ||||||||||||||| |||| ||| |  |||||||||||| || |||||||| || |||||  | |||||||||  ||||||   |||| |||     
T  54596757 gtgtaaaattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattt 54596856  T
Q  270 tagaattgattttcac 285  Q
    ||||||||||||||||    
T  54596857 tagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 46551293 - 46551207
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca-tttttagtcggaattac-tttaaccaaaatcaattcc 378  Q
    ||||||||  |||| ||||||||| ||||||||||| ||||| |||| | |||| |||||||| ||| |||||||||||||||||||    
T  46551293 aatttatagctcaactcacttttatatgaatgtattcaaacaaaaattacttttaagtcggaagtacttttaaccaaaatcaattcc 46551207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 47356385 - 47356272
Alignment:
Q  176 aattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaat 275  Q
    |||||||||||| || |||| |||||  |||||| ||||| || || ||  ||||| ||||| ||||||||||| ||||| | |  ||||||| ||||||    
T  47356385 aattgattatgatatgtttggttgctatcaagtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaat 47356286  T
Q  276 tgattttcacacat 289  Q
    ||||||| ||||||    
T  47356285 tgatttttacacat 47356272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 48411004 - 48410891
Alignment:
Q  124 tgtatgtttggttccacttctagagggagtc-gagttgattctgggagtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgc 222  Q
    ||||||||||||| ||||| ||||||| ||| || ||||||||   ||||| ||||||||| ||| || |||| |||||  | |||||||||| || |||    
T  48411004 tgtatgtttggttacacttttagaggg-gtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgc 48410906  T
Q  223 ctccagaattgattc 237  Q
    ||||| |||||||||    
T  48410905 ctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 7717431 - 7717391
Alignment:
Q  206 agtagaattgtttatgcctccagaattgattcaacttgaag 246  Q
    |||||||||| || |||||||||||||||||| ||||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaag 7717391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 44771633 - 44771753
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    |||||||| ||||| |||||| || |  ||||  || ||||||||| || ||||||| |||||||||| || | ||  ||  |||||| | |||||||||    
T  44771633 gtgtagaactgattctgacatgttgggctgctatcaggtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattc 44771732  T
Q  270 tagaattgattttcacacatt 290  Q
    || |||||||||| |||||||    
T  44771733 taaaattgatttttacacatt 44771753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 42816523 - 42816441
Alignment:
Q  261 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||| |||||||||||||||||||||||     ||||||||||||||||||||| |||||||||||||  ||||||| ||||||||    
T  42816523 ttttaattctagaattgattttcacacaca---aatttataattcaattcacttctacatgaatgtatgcaaacacatatcatttt 42816441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 25156230 - 25156312
Alignment:
Q  261 ttttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttt 346  Q
    |||| ||||||||||||||||| ||||||    |||| |||| |||| ||||||||| ||||||||||| ||||||||||||||||    
T  25156230 tttttattctagaattgatttttacacata---aattaataaatcaactcacttttatatgaatgtattcaaacacaaatcatttt 25156312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 347
Target Start/End: Original strand, 22195803 - 22195977
Alignment:
Q  170 gtgtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattc 269  Q
    ||||| |||| |||||||||| |||| ||  || | |||||||||| ||||| |  || ||||||||  |||| ||| ||||||||||   |||||||||    
T  22195803 gtgtaaaattaattatgacatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattc 22195902  T
Q  270 tagaattgattttcacacatttataatttataattcaattcacttttacatgaatgtattgaaacacaaatcattttt 347  Q
    || ||||||||||||||  |  ||| |||||| || |||||||||||||||  ||||||  ||||||||||| |||||    
T  22195903 taaaattgattttcaca--tgcata-tttatagtttaattcacttttacattcatgtatccaaacacaaatctttttt 22195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 35772235 - 35772352
Alignment:
Q  208 tagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaa 307  Q
    |||||||| || || ||||| |||| |||| |||| || ||| ||||||| | |||||||| ||||||||||||||||| ||    ||||||||||||||    
T  35772235 tagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaat---aaatttataattcaa 35772331  T
Q  308 ttcacttttacatgaatgtat 328  Q
    || ||||||| || |||||||    
T  35772332 tttacttttatataaatgtat 35772352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 323
Target Start/End: Complemental strand, 41386955 - 41386811
Alignment:
Q  176 aattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaat 275  Q
    |||||||| |||||| |||| |||||  | |||| ||||| ||   ||| |||||||||||| |||||||| || ||||||| | |||| ||||||||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaat 41386856  T
Q  276 tgattttcacacatttataatttataattcaattcacttttacatgaa 323  Q
    |||| || |||||     |||||||||||||| |||||||| ||||||    
T  41386855 tgatatttacaca---caaatttataattcaactcacttttgcatgaa 41386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 1410958 - 1411018
Alignment:
Q  227 agaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacac 287  Q
    ||||||||||| | |||||||||| |||||| ||||||| || ||||||||||||||||||    
T  1410958 agaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacac 1411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 32295244 - 32295292
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatca 342  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  32295244 aatttataattcaactcacttttacataaatgtattaaaacacaaatca 32295292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 40491558 - 40491672
Alignment:
Q  211 aattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattc 310  Q
    ||||| || ||||| ||||||||| || ||||||||||| | ||||| | |||||||||||||||||| ||| |||||     |||||| | || || ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacaca---caaatttaaagtttaactc 40491654  T
Q  311 acttttacatgaatgtat 328  Q
    ||||||||||||||||||    
T  40491655 acttttacatgaatgtat 40491672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 44856948 - 44856843
Alignment:
Q  172 gtagaattgattatgacatttttgcttgctggcaagtagaattgtttatgcctccagaattgattcaacttgaagttatgatttgtcgattttgattcta 271  Q
    ||||||||||||||||||| |||| |||||   ||||||||||| || | |||||| ||||||| | |||||||  |||||||| |    ||||||||||    
T  44856948 gtagaattgattatgacatatttggttgct---aagtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattcta 44856854  T
Q  272 gaattgatttt 282  Q
    |||||||||||    
T  44856853 gaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 40422765 - 40422828
Alignment:
Q  204 caagtagaattgtttatgcctccagaattgattc-aacttgaagttatgatttgtcgattttga 266  Q
    |||||||||||| || |||||| ||||||||||| |||||||||||| ||||||| | ||||||    
T  40422765 caagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 9480634 - 9480572
Alignment:
Q  294 aatttataattcaattcacttttacatgaatgtattgaaacacaaatcatttttagtcggaat 356  Q
    ||||||||||| || ||||||||| ||||||||||| || ||||||| |  ||||||||||||    
T  9480634 aatttataatttaactcacttttaaatgaatgtattcaatcacaaattacctttagtcggaat 9480572  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 22198192 - 22198246
Alignment:
Q  343 tttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaa 396  Q
    ||||||||| |||||||||| |||||||||||||||  |||||| ||||||||||    
T  22198192 tttttagtcagaattacttttaaccaaaatcaattcttcccaccgcacaatcaaa 22198246  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 22239629 - 22239575
Alignment:
Q  343 tttttagtcggaattacttt-aaccaaaatcaattccccccacctcacaatcaaa 396  Q
    ||||||||| |||||||||| |||||||||||||||  |||||| ||||||||||    
T  22239629 tttttagtcagaattacttttaaccaaaatcaattcttcccaccgcacaatcaaa 22239575  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 27571853 - 27571974
Alignment:
Q  222 cctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatg 321  Q
    |||| ||||||||||| |||||||||||  | |||  | |||||||||||||||||||||| ||||   |  | ||||| |||||| |||| |||||||     
T  27571853 cctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaacac---tcaagtttattattcaactcacatttacata 27571949  T
Q  322 aatgtattgaaacacaaatcatttt 346  Q
    |||||||  || || ||||||||||    
T  27571950 aatgtatccaaccataaatcatttt 27571974  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 220694 - 220597
Alignment:
Q  226 cagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaat 324  Q
    |||||||||||| |||||||| |||| ||||  | |||||||||||||||||||||| | | |   | |||||||| ||||||||||||||| ||||||    
T  220694 cagaattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagata-caaaaatttatagttcaattcacttttatatgaat 220597  T

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