View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_low_4 (Length: 602)
Name: NF14288_low_4
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 44999016 - 44998434
Alignment:
| Q |
1 |
atatgaaaatcccagttgaatgaatgggaagttgtgatgggacccattaggagagtccctgagtcgtcacgtgttcggatgaacgtgtcacggcaagaaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999016 |
atatgaaaatcccagttgaatg----ggaagttgtgatgggacccattaggagagtccctgagtcgtcacgtgttcggatgaacgtgtcacggcaagaaa |
44998921 |
T |
|
| Q |
101 |
gtactgttcaaacggttcgtgaaggaactatacactactacacaacacaggaatctgactggtttcaagtcagagtcagattcagaagaagatagatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998920 |
gtactgttcaaacggttcgtgaaggaactatacactactacacaacacaggaatctgactggtttcaagtcagagtcagattcagaagaagatagatcca |
44998821 |
T |
|
| Q |
201 |
catagatatgacgagaaagtacaacaaattcaattgaaatatatatcaaaaatgttgttagggcatggtatagtataccttggtagggcatttctcaccg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44998820 |
catagatatgacgagaaagtacaacaaattcaattaaaatatatatgaaaaatgttgttcgggcatggtatagtataccttggtagggcatttctcaccg |
44998721 |
T |
|
| Q |
301 |
cgttccttagcaatggcttgaacctgaatcaagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaactt |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998720 |
cgttccttagcaattgcttgaacctgaatcaagaactcacgacattgttcatagagatgaaaaagataatctagaccgttctttttgccacgtgcaactt |
44998621 |
T |
|
| Q |
401 |
ccccaggctctgtcacaatgaatggatgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998620 |
ccccaggctctgtcacaatgaatggatgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatg |
44998521 |
T |
|
| Q |
501 |
atcaccatttcccttcatcttcatccttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtact |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998520 |
atcaccatttcccttcatcttcatccttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtact |
44998434 |
T |
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