View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14288_low_5 (Length: 583)

Name: NF14288_low_5
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14288_low_5
NF14288_low_5
[»] chr6 (1 HSPs)
chr6 (44-319)||(2967808-2968083)
[»] chr2 (2 HSPs)
chr2 (318-565)||(31405463-31405710)
chr2 (258-319)||(31409430-31409491)
[»] chr4 (18 HSPs)
chr4 (318-565)||(14205248-14205495)
chr4 (42-212)||(30179490-30179660)
chr4 (209-307)||(30179372-30179470)
chr4 (258-319)||(14209194-14209255)
chr4 (258-319)||(14210145-14210206)
chr4 (258-319)||(14211114-14211175)
chr4 (258-319)||(14212065-14212126)
chr4 (258-319)||(14213034-14213095)
chr4 (258-319)||(14214971-14215032)
chr4 (258-319)||(14215940-14216001)
chr4 (258-319)||(14216891-14216952)
chr4 (258-319)||(14217842-14217903)
chr4 (258-319)||(14218812-14218873)
chr4 (258-319)||(14219781-14219842)
chr4 (258-319)||(14220732-14220793)
chr4 (258-319)||(14221701-14221762)
chr4 (258-319)||(14222670-14222731)
chr4 (268-319)||(14214012-14214063)
[»] chr1 (3 HSPs)
chr1 (132-319)||(40981192-40981379)
chr1 (250-319)||(50290720-50290789)
chr1 (50-133)||(24036400-24036483)
[»] chr3 (2 HSPs)
chr3 (160-319)||(14458894-14459053)
chr3 (160-319)||(12812535-12812694)
[»] chr7 (1 HSPs)
chr7 (42-175)||(43903834-43903967)
[»] chr5 (1 HSPs)
chr5 (46-139)||(22009254-22009343)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 44 - 319
Target Start/End: Original strand, 2967808 - 2968083
Alignment:
Q  44 gattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatggtt 143  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||    
T  2967808 gattcaaaatcgaaccttttgaactcagtgatggaggagaatcagaagattgagttgagaatttgaaatcgctgacggtgaaggacggttgagaatcgtt 2967907  T
Q  144 aatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggata 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2967908 aatccatctgaaggacctgaaaagttgtcgttggtggcgccgccgatggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggatg 2968007  T
Q  244 aagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||| |||||||||||    
T  2968008 aagaggaggcggtgaaggagtctgtttggatggagtgtgaagaggagatggtgagatgtttggtctccgatggatg 2968083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 318 - 565
Target Start/End: Original strand, 31405463 - 31405710
Alignment:
Q  318 tgatacactcgatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 417  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405463 tgatacactctatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 31405562  T
Q  418 ccatcagtgtccatcatatcaaacttttgttccaattccgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 517  Q
    |||||| ||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31405563 ccatcaatgtacatcatataaaacttttgttccaatcctgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 31405662  T
Q  518 caaaaaaggacaatctccctattgaacaaacctcctggtggtgataaa 565  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31405663 caaaaaaggacgatctccctattgaacaaacctcctggtggtgataaa 31405710  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 31409430 - 31409491
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31409430 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 31409491  T

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Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 318 - 565
Target Start/End: Original strand, 14205248 - 14205495
Alignment:
Q  318 tgatacactcgatacgttgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 417  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14205248 tgatacactctatacgctgtaatgtacttcgaaatggttaatttaatgttgttattattacataatttaaaatggatgtaaaaataaaatatgatcgcag 14205347  T
Q  418 ccatcagtgtccatcatatcaaacttttgttccaattccgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 517  Q
    |||||| ||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14205348 ccatcaatgtacatcatattaaacttttgttccaatcctgttccatcagctccaaaatatagcaaaaacaggatcaggcttgtatagccattatttactt 14205447  T
Q  518 caaaaaaggacaatctccctattgaacaaacctcctggtggtgataaa 565  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14205448 caaaaaaggacgatctccctattgaacaaacctcctggtggtgataaa 14205495  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 30179660 - 30179490
Alignment:
Q  42 aggattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatgg 141  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||| | |    
T  30179660 aggattcaaaatggaaccttttggaatcagtgatggaggagaatcagaagattggggtgagaatctgaaatcgctaatggtgacggacagttgagactcg 30179561  T
Q  142 ttaatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgatagg 212  Q
    |||||||||||||||||   ||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  30179560 ttaatccatctgaaggaatggaaaagttgtcgttggtggcgccaccggtggtttggaagatcggcgatagg 30179490  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 30179470 - 30179372
Alignment:
Q  209 taggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggt 307  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  30179470 taggtggtgtgaagaagccgaagcagttttggatgaagagaaggcggtgaaggagtttgtttaggtggagtgtgaagaggagatggtgagatgcttggt 30179372  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14209194 - 14209255
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14209194 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14209255  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14210145 - 14210206
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14210145 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14210206  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14211114 - 14211175
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14211114 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14211175  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14212065 - 14212126
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14212065 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14212126  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14213034 - 14213095
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14213034 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14213095  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14214971 - 14215032
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14214971 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14215032  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14215940 - 14216001
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14215940 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14216001  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14216891 - 14216952
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14216891 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14216952  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14217842 - 14217903
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14217842 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14217903  T

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Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14218812 - 14218873
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14218812 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14218873  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14219781 - 14219842
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14219781 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14219842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14220732 - 14220793
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14220732 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14220793  T

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Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14221701 - 14221762
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14221701 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14221762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 14222670 - 14222731
Alignment:
Q  258 aaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14222670 aaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14222731  T

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Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 14214012 - 14214063
Alignment:
Q  268 tttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14214012 tttgggtggagtgtgaagaggagatggtgagatgcttggtttcctatggatg 14214063  T

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Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 132 - 319
Target Start/End: Original strand, 40981192 - 40981379
Alignment:
Q  132 ttgagaatggttaatccatctgaaggacctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaag 231  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40981192 ttgagaatcgttaatccatctgaagaacctgaaaagttgtcgttggtggcgccgccggtggtttggaagatcggtgataggttgtgtgaagaagccggag 40981291  T
Q  232 cagttttggataaagaggaggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40981292 cagttttggatgaagaggaggcggtgaaggagtctgtttgggtggagtgtgaagaggagatggtgagatgcttggtctccgatggatg 40981379  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 50290789 - 50290720
Alignment:
Q  250 aggcggtgaaggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  50290789 aggcggtgaaggagtctgtttgtgtggagtgtgaagaggagatggtgagatgcttggtctccgatggatg 50290720  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 24036400 - 24036483
Alignment:
Q  50 aaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggtt 133  Q
    |||| ||||||||  |||||| ||||||||||||||||  ||  | || |||||||||||||||| ||| ||||||||| ||||    
T  24036400 aaattgaacctttaagactcaatgatggaggagaatcaacaggcttggatgagaatctgaaatcgttaatggtgaaggatggtt 24036483  T

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Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 14458894 - 14459053
Alignment:
Q  160 ctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaa 259  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14458894 ctgaaaaattgtcgttcatggcgccgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggatgaagaggaggcggtgaa 14458993  T
Q  260 ggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
     |||||  |||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  14458994 agagtctatttgggtggaatgtgaagaggagatggtgagatgcttggtctccgatggatg 14459053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 12812535 - 12812694
Alignment:
Q  160 ctgaaaagttgtcgttggtggcgtcgccggtggtttggaagatcggtgataggttgtgtgaagaagccgaagcagttttggataaagaggaggcggtgaa 259  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||    
T  12812535 ctgaaaagttgtcgttggtggcgccgccagtggtttggaagatgggtgataggttgtgtgaagaagccgaagtagttttggatgaagaagaggctgtgaa 12812634  T
Q  260 ggagtccctttgggtggagtgtgaagaggagatggtgagatgcttggtttccgatggatg 319  Q
    ||||||  ||||| |||||||||||||||||||||| |||||||| || |||||||||||    
T  12812635 ggagtctatttggttggagtgtgaagaggagatggtaagatgctttgtctccgatggatg 12812694  T

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Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 43903967 - 43903834
Alignment:
Q  42 aggattcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaatgg 141  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||| |||| ||||||||||||||| |||| |||||||||| ||||||||| |    
T  43903967 aggattcaaaatcgaaccttctggactcagtgatggaggagaatcgaaagaatggggtgagaatctgaaatcactaatggtgaaggactgttgagaatcg 43903868  T
Q  142 ttaatccatctgaaggacctgaaaagttgtcgtt 175  Q
    ||||||||||||||||||  ||||||||||||||    
T  43903867 ttaatccatctgaaggactggaaaagttgtcgtt 43903834  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 22009254 - 22009343
Alignment:
Q  46 ttcaaaatcgaaccttttggactcagtgatggaggagaatcagaagattgggttgagaatctgaaatcgctaacggtgaaggacggttgagaat 139  Q
    ||||||||||||||    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||    
T  22009254 ttcaaaatcgaacc----ggactcagtgatgcaggagaatcagaagattggggtgagaatctgaaatcgctaatggtgaaggatggttaagaat 22009343  T

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