View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14288_low_9 (Length: 485)
Name: NF14288_low_9
Description: NF14288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14288_low_9 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 469
Target Start/End: Complemental strand, 6595795 - 6595335
Alignment:
| Q |
10 |
aagaatatgataacactatattgaataaattttgtgaacaaacttgaatgtcttttagattttcttgtcctcacacatccccgcaaaatagaaaagtcaa |
109 |
Q |
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| T |
6595795 |
aagaatatgataacactatattgaataaattttgtgaacaaatttgaatgtcttttagattttcttgtccttacacatccccgcaaaatagaaaagtcaa |
6595696 |
T |
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| Q |
110 |
aagaaaaatatgtaccatcaacaacaccatttgtacccttcttgcccatgcctctctacctacataatattatcccaaataaaaagttttccctctaatc |
209 |
Q |
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| T |
6595695 |
aacaaaaatatgtaccatcaacaacaccatttgtacccttcttgcccatgcctctctacctacataatattatcccaaatagaaagttttccctctaatc |
6595596 |
T |
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| Q |
210 |
acgcactaaaatactctatcaaaaagattcatactattctcatctttgagtctttggatgtctcagctaccctttcatttcttcaatgtctagaaataag |
309 |
Q |
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| T |
6595595 |
atgcactaaaatactctatcaaaaagatttgtaccattctcatctttgaatctttggatgtctcagctaccctttcatttcttcaacctttagaaataag |
6595496 |
T |
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| Q |
310 |
ttacaacctcgttgaacaccttgtatcttcttaggatatccatcaaatcttagaggacacaaacgttataagtaatctagccgtaaaatatttattttcc |
409 |
Q |
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| T |
6595495 |
ttacaacctcgttgaacaccttatatcttcttaggatatccatcaaatcatagaggacataaacgttacaagtaatctagccgtaaaatatttattttcc |
6595396 |
T |
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| Q |
410 |
gacatgttatttttgaagaaaatacattccttttgact-attcaaatgttcctacaacggt |
469 |
Q |
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| T |
6595395 |
gacatgttatttttgaagaaaatacattccttttgactaattcaaatgttcctacaacggt |
6595335 |
T |
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Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 89720 - 89816
Alignment:
| Q |
34 |
ataaattttgtgaacaaacttgaatgtcttttagattttcttgtcctcacacatccccgcaaaatagaaaagtcaaaagaaaaatatgtaccatcaa |
130 |
Q |
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| T |
89720 |
ataagttttgtgaacaaaatggaatgtcttttcgattctcttgtcctcatacctcccctcaaaatggaaaagccgaaagaaaaatttgtacaatcaa |
89816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 25626106 - 25626010
Alignment:
| Q |
34 |
ataaattttgtgaacaaacttgaatgtcttttagattttcttgtcctcacacatccccgcaaaatagaaaagtcaaaagaaaaatatgtaccatcaa |
130 |
Q |
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| T |
25626106 |
ataagttttgtgaacaaaatggaatgtcttttcgattctcttgtcctcatacctcccctcaaaatggaaaagccgaaagaaaaatttgtacaatcaa |
25626010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 10535670 - 10535586
Alignment:
| Q |
34 |
ataaattttgtgaacaaacttgaatgtcttttagattttcttgtcctcacacatccccgcaaaatagaaaagtcaaaagaaaaat |
118 |
Q |
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| T |
10535670 |
ataagttttgtgaacaaaatggaatgtcttttcgattctcttgtcctcatacctcccctcaaaatggaaaagccgaaagaaaaat |
10535586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 4803942 - 4803863
Alignment:
| Q |
39 |
ttttgtgaacaaacttgaatgtcttttagattttcttgtcctcacacatccccgcaaaatagaaaagtcaaaagaaaaat |
118 |
Q |
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| T |
4803942 |
ttttgtgaacaaaatggaatgtcttttcgattctcttgtcctcatacctcccctcaaaatggaaaagtcgaaagagaaat |
4803863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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