View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_15 (Length: 511)
Name: NF14289_high_15
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 29792763 - 29793257
Alignment:
| Q |
1 |
ctactgaagcagtcaaaaagaagaaaatctaaccttcatgtgaaaatccctggggtttgatggtgtcaccacaaccttgagaatttgtcagcttgctgca |
100 |
Q |
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| T |
29792763 |
ctactgaagcagtcaaaaagaagaaaatctaaccttcatgtgaaaatccctggggtttgatggtgtcaccacaaccttgagaatttgtcagcttgctgca |
29792862 |
T |
|
| Q |
101 |
catagagtacatgtctgcatacaccaagaggaaaaagatcttttagatactggattgttgtttagcaggaaactgaaaattgaaattatgtagggaggcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29792863 |
catagagtacatgtctgcatacaccaagaggaaaaagatctttttgatactggattgttgtttagcaggaaactgaaaattgaaattatgtagggaggcg |
29792962 |
T |
|
| Q |
201 |
ggaatagtttccaatatttcaacaccttctagttcaaacaactaaagtcttcctaatacacgacacaacacaagcatgttctgatcataaaaatagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29792963 |
ggaatagtttccaatatttcaacaccttctagttcaaacaactaaagtcttcctgatacacgacacaacacaagcatgttctgatcataaaaatagaaaa |
29793062 |
T |
|
| Q |
301 |
tgccacataatacaaactattatttannnnnnngaataactagcaagtaggagaagtcgaagacattgatgataaaaaatgacaacaacaaacacaccaa |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793063 |
tgccacataatacaaactattatttttttttttgaataactagcaagtaggagaagttgaagacattgatgataaaaaatgacaacaacaaacacaccaa |
29793162 |
T |
|
| Q |
401 |
ggaacgattcatgagtatcatattttctatttattggttttgtcaactgtgaaacttaatgatcataagtatcagtttatctctgtggctaattt |
495 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29793163 |
ggaacgattcatgagtatcatattttctatttattggatttgtcaattgtgaaacttaatgatcataagtatcagtttatctctgtggctaattt |
29793257 |
T |
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