View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_17 (Length: 487)

Name: NF14289_high_17
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_17
NF14289_high_17
[»] chr1 (3 HSPs)
chr1 (213-472)||(37306284-37306543)
chr1 (1-193)||(37306699-37306891)
chr1 (333-391)||(5242595-5242653)
[»] chr7 (2 HSPs)
chr7 (325-406)||(37587447-37587528)
chr7 (333-404)||(46135139-46135210)
[»] chr4 (4 HSPs)
chr4 (325-406)||(36280256-36280337)
chr4 (333-391)||(50091291-50091349)
chr4 (333-388)||(11942586-11942641)
chr4 (349-391)||(10065294-10065336)
[»] chr2 (5 HSPs)
chr2 (325-400)||(4639994-4640069)
chr2 (325-400)||(34099066-34099141)
chr2 (325-399)||(9483990-9484064)
chr2 (333-404)||(13467444-13467515)
chr2 (338-391)||(13464710-13464763)
[»] chr6 (2 HSPs)
chr6 (325-399)||(20473489-20473563)
chr6 (333-404)||(8001324-8001395)
[»] chr3 (3 HSPs)
chr3 (325-399)||(3861151-3861225)
chr3 (333-405)||(35188957-35189029)
chr3 (335-380)||(49019534-49019579)
[»] chr5 (2 HSPs)
chr5 (310-404)||(1554763-1554856)
chr5 (333-380)||(9102340-9102387)
[»] chr8 (1 HSPs)
chr8 (325-383)||(15442394-15442452)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 213 - 472
Target Start/End: Complemental strand, 37306543 - 37306284
Alignment:
Q  213 atagttgtcttttatatactttggaagggttgctggtatatctggtggtttaattaaacgagaacgggttgaagtctgttatgaagcnnnnnnngccaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||    
T  37306543 atagttgtcttttatatactttggaagggttgctggtatatctggtggtttaattacacgagaacgggttgaagtctgttatgaagctttttttgccaaa 37306444  T
Q  313 aataaaaatttctgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgttgaatac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37306443 aataaaaatttctgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgttgaatac 37306344  T
Q  413 ttggtattttacgttgtatttcgtaaccacttattaagaaataaatttcattaatttact 472  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||    
T  37306343 ttggtattttactttctatttcgtaaaaacttattaagaaataaatttcattaatttact 37306284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 37306891 - 37306699
Alignment:
Q  1 ttgggtgtatcaatgagtgtctatgcaatagttttctaatatcattgtgtggttagtttatgtagttgattcaattcatccgatggttggagggattgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37306891 ttgggtgtatcaatgagtgtctatgcaatagttttctaatatcattgtgtggttagtttatgtagttgattcaattcatccgatggttggagggattgtg 37306792  T
Q  101 tggttgggctggtttgagttatgagactaaatgagttgacgagttaaataatcaaagttcaaattctgacgaagagttaaacatcatgcaatt 193  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37306791 tggttaggctggtttgagttatgagactaaatgagttgacgagttaaataatcaaagttcaaattctgacgaagagttaaatatcatgcaatt 37306699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 5242653 - 5242595
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5242653 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 5242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 325 - 406
Target Start/End: Original strand, 37587447 - 37587528
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgtt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37587447 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctttttgtt 37587528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 46135210 - 46135139
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  46135210 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttgttg 46135139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 36280337 - 36280256
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgtt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36280337 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttcttgtt 36280256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 50091349 - 50091291
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 391  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50091349 ttgagagttgaactcaagacctcccgcttactaaacaggtgctctaaccaactgagcta 50091291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 11942586 - 11942641
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgag 388  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11942586 ttgagagtcgaactcaagacgtcccgcttactaaacgggtgatctaaccaactgag 11942641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 10065336 - 10065294
Alignment:
Q  349 agacctcccgcttactaaacgggtgctctaaccaactgagcta 391  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  10065336 agacctcccgcttactaaacgggtgctctaaccaaatgagcta 10065294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 4639994 - 4640069
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639994 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 4640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 34099141 - 34099066
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34099141 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 34099066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 9483990 - 9484064
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9483990 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 9484064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 13467444 - 13467515
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  13467444 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctggttg 13467515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 13464710 - 13464763
Alignment:
Q  338 agttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 391  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  13464710 agttgaattcaagacctcccgcttactaaacaagtgctctaaccaactgagcta 13464763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 20473489 - 20473563
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20473489 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 20473563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 8001395 - 8001324
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||    
T  8001395 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctagttg 8001324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 3861151 - 3861225
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3861151 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagct 3861225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 405
Target Start/End: Complemental strand, 35189029 - 35188957
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  35189029 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 35188957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 49019534 - 49019579
Alignment:
Q  335 gagagttgaactcaagacctcccgcttactaaacgggtgctctaac 380  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  49019534 gagagttgaactcaagacctcccgcttactaaacaggtgctctaac 49019579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 404
Target Start/End: Complemental strand, 1554856 - 1554763
Alignment:
Q  310 aaaaataaaaatttctgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttg 404  Q
    |||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  1554856 aaaaataataattt-tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttgttg 1554763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 9102387 - 9102340
Alignment:
Q  333 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9102387 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 9102340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 15442394 - 15442452
Alignment:
Q  325 tgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaa 383  Q
    |||||||||| ||||||||| |||| |||||| ||||| || |||| ||||||||||||    
T  15442394 tgctttcattaagagttgaattcaaaacctcctgcttattacacggatgctctaaccaa 15442452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University