View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_21 (Length: 440)
Name: NF14289_high_21
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_21 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 172 - 371
Target Start/End: Original strand, 12870976 - 12871174
Alignment:
| Q |
172 |
aacctacacatctgcaagaaagttgttaattttatgtttgtatgagaaaattatgaacttttcaactcaaaatcattggtttttctattatttgtgaaat |
271 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870976 |
aacctacacatctgcaagaaagttggtaattttatgtttgtagaagaaaattatgaacttttcaactcaaaatcattggtttttctattatttgtgaaat |
12871075 |
T |
|
| Q |
272 |
atttgaacaaaaccatttgctacattggttgtttctttagttttgttttgaaaagtttccagctttaattttctggagttttgcagccagcagctgttag |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12871076 |
-tttgaacaaaaccatttgctacattggttgtttctttagttttgttttgaaaagtttccagctttaattttctggagttttgcggccagcagctgttag |
12871174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 12870817 - 12870934
Alignment:
| Q |
19 |
actcggtggttctatcaactttgattttatatccgagctttccttggcaagaaatgccgctatttggc----nnnnnnnntatcaaaatatagcaattgg |
114 |
Q |
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| T |
12870817 |
actcggtggttctaacaactttgattctatattcgagctttccttggcaagaaatgcagctatttggcaacaacaaaaaaaatcaaaatatagcaattgg |
12870916 |
T |
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| Q |
115 |
ggtaccaaggtagttgag |
132 |
Q |
| |
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|||| ||||||||||||| |
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| T |
12870917 |
ggtatcaaggtagttgag |
12870934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 12871195 - 12871236
Alignment:
| Q |
392 |
agttaccttctggtgtagcagttctattactgttattctctg |
433 |
Q |
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| T |
12871195 |
agttaccttctggtgtagcagttctattactgttattgtctg |
12871236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 172 - 433
Target Start/End: Original strand, 27766135 - 27766395
Alignment:
| Q |
172 |
aacctacacatctgcaagaaagttgttaattttatgtttgtatgagaaaattatgaacttttcaactcaaaatcattggtttttctattatttgtgaaat |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27766135 |
aacctacacatctgcaagaaagttgttaattttatgtttgtagaagaaaattatgaacttttcaactcaaaatcattggtttttctattatttgtgaaat |
27766234 |
T |
|
| Q |
272 |
atttgaacaaaaccatttgctacattggttgtttctttagttttgttttgaaaagtttccagctttaattttctggagttttgcagccagcagctgttag |
371 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27766235 |
-tttgaacaaaatcatttgctacattggttgtttctttagttttgttttgaaaagtttccaactttaattttctggagttttgcggccagcagctgttag |
27766333 |
T |
|
| Q |
372 |
gagnnnnnnnnnnnnnnnnnagttaccttctggtgtagcagttctattactgttattctctg |
433 |
Q |
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||| |||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27766334 |
gagtttcgttttttggttttagttaccttccggtgtagcagttctattactgttattgtctg |
27766395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 27765981 - 27766092
Alignment:
| Q |
19 |
actcggtggttctatcaactttgattttatatccgagctttccttggcaagaaatgccgctatttggcnnnnnnnntatcaaaatatagcaattggggta |
118 |
Q |
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| T |
27765981 |
actcggtggttctatcaactttgattttatatccgagctttccttggcaagaaatgccgctatttggc--aaaaaatatcaaaatatagcaattggggta |
27766078 |
T |
|
| Q |
119 |
ccaaggtagttgag |
132 |
Q |
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||||||||||||| |
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| T |
27766079 |
tcaaggtagttgag |
27766092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 18331852 - 18331810
Alignment:
| Q |
230 |
ttttcaactcaaaatcattggtttttctatt-atttgtgaaat |
271 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
18331852 |
ttttcaactcaaaattattggtttttctattcatttgtgaaat |
18331810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 12537846 - 12537723
Alignment:
| Q |
207 |
gtttgtatgagaaaattatgaacttttcaactcaaaatcattggtttttctatt-atttgtgaaatatttgaacaaaaccatttgctacattggttgttt |
305 |
Q |
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||||||| ||||| ||||||||||||||||| |||||| ||||||| |||||| |||||||| || ||||||| | | | |||| || ||||||| ||| |
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| T |
12537846 |
gtttgtagaagaaagttatgaacttttcaacttaaaatcgttggtttctctattcatttgtgacat-tttgaactatatcgtttgttagattggtttttt |
12537748 |
T |
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| Q |
306 |
ctttagttttgttttgaaaagtttc |
330 |
Q |
| |
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||| | ||||||||||||||||||| |
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| T |
12537747 |
cttaatttttgttttgaaaagtttc |
12537723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 28736 - 28859
Alignment:
| Q |
207 |
gtttgtatgagaaaattatgaacttttcaactcaaaatcattggtttttctatt-atttgtgaaatatttgaacaaaaccatttgctacattggttgttt |
305 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |||||| |||| || |||||| |||||||| || ||||||| | | | |||| || ||||||| ||| |
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| T |
28736 |
gtttgtagaagaaagttatgaacttttcaacttaaaatcgttgggttctctattcatttgtgacat-tttgaactatatcgtttgttagattggttattt |
28834 |
T |
|
| Q |
306 |
ctttagttttgttttgaaaagtttc |
330 |
Q |
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||| | ||||||||||||||||||| |
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| T |
28835 |
cttaatttttgttttgaaaagtttc |
28859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 38950757 - 38950715
Alignment:
| Q |
230 |
ttttcaactcaaaatcattggtttttctatt-atttgtgaaat |
271 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
38950757 |
ttttcaactcaaaattattggtttttctattcatttgtgaaat |
38950715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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