View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_24 (Length: 434)
Name: NF14289_high_24
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 45067905 - 45067490
Alignment:
| Q |
19 |
caattggagttcatgtattcatccatctgactttccattattgcatgtcaaggaaaattgatctttgatcattatccatgtgcttgattgtagtataata |
118 |
Q |
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| T |
45067905 |
caattggagttcatgtattcatctatctgactttccattattgcatgtcaaagaaaattgatctttgatcattatccatgtgcttgattgtagtataata |
45067806 |
T |
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| Q |
119 |
ggattcagttacaatgacatcaaatgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacat |
218 |
Q |
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| T |
45067805 |
ggattcagttacaatgacatcaaatgattcctaagatttctgattgcagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacat |
45067706 |
T |
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| Q |
219 |
gattgatcagacaacccttggacatcgattcatcaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtg |
318 |
Q |
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| T |
45067705 |
gattgatcagacaacccttggacatcgattcatcaaagaagtattcgggataactccaagaataggatggcaaattgatccatttggacattctgcagtg |
45067606 |
T |
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| Q |
319 |
caggcctacttgttgggagcagaggtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgatttgcct |
418 |
Q |
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| T |
45067605 |
caggcctacttgttgggagcagaggtaccattttgttaaattgtaagaaacatataaatttgatgatgagaaaaagaatgattttgaagttgatttgcct |
45067506 |
T |
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| Q |
419 |
ataagtctattcattt |
434 |
Q |
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| T |
45067505 |
ataagtctattcattt |
45067490 |
T |
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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 165 - 338
Target Start/End: Complemental strand, 32385657 - 32385484
Alignment:
| Q |
165 |
cagaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagaagtattc |
264 |
Q |
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| T |
32385657 |
cagaaacggtggcatgtgtatgcatgatgaggcagtagttcattacatagacatgattgatcagactacacttggacaccgatttctgaaagaggagttc |
32385558 |
T |
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| Q |
265 |
gggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagc |
338 |
Q |
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| T |
32385557 |
gatttgactccaagaattggttggcaaattgacccgtttggacattctgctgtgcaggcttatttattgggagc |
32385484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 32400016 - 32399827
Alignment:
| Q |
166 |
agaaatggtggtatgtgtatgcacgatgaggctgctgcacattacattgacatgattgatcagacaacccttggacatcgattcatcaaagaagtattcg |
265 |
Q |
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| T |
32400016 |
agaaatggtggtatgtgcatgcatgacgaggccaccccgcattacattgacctgattgatcagaccactcttgggcatcaatttatcaaagatgagtttg |
32399917 |
T |
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| Q |
266 |
ggataactccaagaataggatggcaaattgatccatttggacattctgcagtgcaggcctacttgttgggagcagaggtaccattttgtt |
355 |
Q |
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| T |
32399916 |
gtaagaatccaagagttggctggcagattgatccgtttggccattctgcagttcaggcttacttgcttggagctgaggtacgatattgtt |
32399827 |
T |
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