View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_25 (Length: 420)

Name: NF14289_high_25
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_25
NF14289_high_25
[»] scaffold0096 (1 HSPs)
scaffold0096 (264-411)||(27864-28004)
[»] chr3 (9 HSPs)
chr3 (264-379)||(46235402-46235510)
chr3 (264-379)||(38888308-38888416)
chr3 (264-379)||(43747819-43747927)
chr3 (243-315)||(24087997-24088070)
chr3 (243-310)||(49952145-49952212)
chr3 (264-341)||(5175562-5175640)
chr3 (264-313)||(34672603-34672652)
chr3 (263-315)||(13848908-13848961)
chr3 (264-315)||(8319968-8320020)
[»] chr1 (9 HSPs)
chr1 (264-341)||(8170449-8170526)
chr1 (264-341)||(4795981-4796058)
chr1 (264-379)||(25659036-25659144)
chr1 (264-315)||(11523223-11523274)
chr1 (243-298)||(46614467-46614522)
chr1 (243-284)||(43361437-43361478)
chr1 (243-283)||(30721798-30721838)
chr1 (263-315)||(30725807-30725860)
chr1 (264-315)||(41318522-41318574)
[»] scaffold0060 (1 HSPs)
scaffold0060 (268-341)||(67753-67826)
[»] chr8 (8 HSPs)
chr8 (264-379)||(26747862-26747970)
chr8 (264-379)||(27631614-27631722)
chr8 (264-333)||(24100736-24100805)
chr8 (263-320)||(43638369-43638427)
chr8 (264-320)||(9990890-9990947)
chr8 (243-272)||(33449342-33449371)
chr8 (243-279)||(30266011-30266047)
chr8 (243-279)||(43638422-43638458)
[»] chr7 (7 HSPs)
chr7 (264-341)||(2430656-2430733)
chr7 (264-310)||(37566316-37566362)
chr7 (265-313)||(48402628-48402676)
chr7 (263-313)||(42271103-42271153)
chr7 (243-279)||(34996758-34996794)
chr7 (261-313)||(37031323-37031375)
chr7 (264-315)||(41816654-41816706)
[»] chr4 (9 HSPs)
chr4 (264-341)||(49233224-49233301)
chr4 (243-325)||(6447103-6447185)
chr4 (243-341)||(45781824-45781920)
chr4 (266-341)||(49889279-49889354)
chr4 (264-347)||(53921887-53921970)
chr4 (243-320)||(8281456-8281533)
chr4 (264-370)||(30658062-30658170)
chr4 (243-279)||(470108-470144)
chr4 (243-279)||(52399285-52399321)
[»] chr5 (7 HSPs)
chr5 (264-334)||(7529793-7529863)
chr5 (264-341)||(35467956-35468033)
chr5 (266-341)||(9269568-9269645)
chr5 (243-299)||(33084626-33084683)
chr5 (264-315)||(35468279-35468330)
chr5 (244-281)||(27878687-27878724)
chr5 (265-313)||(11447198-11447246)
[»] chr2 (4 HSPs)
chr2 (243-341)||(5077182-5077275)
chr2 (243-279)||(3462684-3462720)
chr2 (243-279)||(4681569-4681605)
chr2 (264-315)||(8588501-8588553)
[»] chr6 (1 HSPs)
chr6 (264-315)||(27899082-27899133)


Alignment Details
Target: scaffold0096 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 264 - 411
Target Start/End: Complemental strand, 28004 - 27864
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||    
T  28004 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttat-------aattaattaaataac 27912  T
Q  364 caatggcataatagacnnnnnnngtcttctttcccctttcttctcact 411  Q
    ||||||||||||||||       |||||||||||||||||||||||||    
T  27911 caatggcataatagactttttttgtcttctttcccctttcttctcact 27864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 46235510 - 46235402
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||       |||| |||||||||| |||    
T  46235510 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacatcattataat-------ttatgattaattaaaaaac 46235418  T
Q  364 caatggcataatagac 379  Q
    ||||||||||||||||    
T  46235417 caatggcataatagac 46235402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 38888416 - 38888308
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||       |||| |||||||||| |||    
T  38888416 agagaaatagaagagaaagaaatgttgttatttttaaaaagataaaaatatccttgataagacaacattataat-------ttatgattaattaaaaaac 38888324  T
Q  364 caatggcataatagac 379  Q
    ||||||||||||||||    
T  38888323 caatggcataatagac 38888308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 43747819 - 43747927
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||       ||||||| | |||||||| |||    
T  43747819 agagaaatagaagagaaagaaatgttattatttttaaaaaaacaaaaatatccttgataagacaacattat-------aatttatgaataattaaaaaac 43747911  T
Q  364 caatggcataatagac 379  Q
    ||||||||||||||||    
T  43747912 caatggcataatagac 43747927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 24088070 - 24087997
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttatta-tttttaaaaagacaaaaatatc 315  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||| ||  | ||||||||||||||||||||||    
T  24088070 tttgatggattgtttggtataagagaaatagaagagaaagagatgctacaattttttaaaaagacaaaaatatc 24087997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 49952212 - 49952145
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaa 310  Q
    |||||||  ||||||| |||||||||||||||||||| |||| ||| ||||||||| |||||||||||    
T  49952212 tttgatgagttgtttgatataagagaaatagaagagaaagaagtgtaattattttttaaaagacaaaa 49952145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 5175640 - 5175562
Alignment:
Q  264 agagaaatagaagagagagaaatgttattattt-ttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    ||||||||| ||| || |||| | ||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||    
T  5175640 agagaaatacaagtgaaagaagtattattatttattaaaaagataaaaataactttgataagacaacattataatttat 5175562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 34672652 - 34672603
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 313  Q
    |||||||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  34672652 agagaaatagaagagaaagaagtgtgattattttttaaaagacaaaaata 34672603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 13848908 - 13848961
Alignment:
Q  263 aagagaaatagaagagagagaaatgt-tattatttttaaaaagacaaaaatatc 315  Q
    |||||||||||||||||||||| ||| | | |||| ||||||||||||||||||    
T  13848908 aagagaaatagaagagagagaagtgtgtttaatttgtaaaaagacaaaaatatc 13848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 8319968 - 8320020
Alignment:
Q  264 agagaaatagaagagagagaaatgttatt-atttttaaaaagacaaaaatatc 315  Q
    |||||||||||||||| |||||| |||||  ||||| ||||||||||||||||    
T  8319968 agagaaatagaagagaaagaaatattattgttttttgaaaagacaaaaatatc 8320020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 8170449 - 8170526
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8170449 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttat 8170526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 4795981 - 4796058
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4795981 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataaaacaacattataatttat 4796058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 25659036 - 25659144
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||       ||||||| |||||||||| |||    
T  25659036 agagaaatagaagagaaagaaatgatattatttttaaaaagacaaaaatatctttgataagacaacattat-------aatttatgattaattaaaaaac 25659128  T
Q  364 caatggcataatagac 379  Q
    ||||| ||||||||||    
T  25659129 caatgacataatagac 25659144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 11523223 - 11523274
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 315  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  11523223 agagaaatagaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 11523274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 46614522 - 46614467
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattattttt 298  Q
    |||||||| ||||||||| ||||||||||||||||||||||| |||  ||||||||    
T  46614522 tttgatgtgttgtttggtttaagagaaatagaagagagagaagtgtgtttattttt 46614467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 43361478 - 43361437
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaa 284  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  43361478 tttgatgtattgtttggtttaagagaaaaagaagagagagaa 43361437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 30721798 - 30721838
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagaga 283  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  30721798 tttgatgtatggtttggtataagagaaatggaagagagaga 30721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 30725860 - 30725807
Alignment:
Q  263 aagagaaatagaagagagagaaatgttatta-tttttaaaaagacaaaaatatc 315  Q
    ||||||||||||||||| ||||||||  ||| ||||||||||||| ||||||||    
T  30725860 aagagaaatagaagagaaagaaatgtgtttagtttttaaaaagaccaaaatatc 30725807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 41318522 - 41318574
Alignment:
Q  264 agagaaatagaagagagagaaatgttattat-ttttaaaaagacaaaaatatc 315  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||||||    
T  41318522 agagaaatagaagagaaagaagtgtgtttatattttaaaaagacaaaaatatc 41318574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 67826 - 67753
Alignment:
Q  268 aaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  67826 aaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacaatataatttat 67753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 26747970 - 26747862
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||       || |||||||| |||||||||| |||    
T  26747970 agagaaatagaagagaaagaaatgttattattttttaaaagacaaaaatatccttgataagacaaca-------ttctaatttatgattaattaaaaaac 26747878  T
Q  364 caatggcataatagac 379  Q
    ||||||||||||||||    
T  26747877 caatggcataatagac 26747862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 27631614 - 27631722
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataatttataattaattaaataac 363  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||       ||| | ||||| |||||||||| |||    
T  27631614 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttaataagataaca-------ttacactttatgattaattaaaaaac 27631706  T
Q  364 caatggcataatagac 379  Q
    ||||||||||||||||    
T  27631707 caatggcataatagac 27631722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 24100736 - 24100805
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacatta 333  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||  |||||||||||| ||||    
T  24100736 agagaaatagaaaagaaagaaatgttattatttttaaaaacacaaaaatattcttgataagacaagatta 24100805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 43638427 - 43638369
Alignment:
Q  263 aagagaaatagaagagagagaaatgttattat-ttttaaaaagacaaaaatatcattga 320  Q
    |||||||||||||||||| || |||||||||| || |||||||||||||||||| ||||    
T  43638427 aagagaaatagaagagagtgagatgttattatattctaaaaagacaaaaatatccttga 43638369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 9990890 - 9990947
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttt-taaaaagacaaaaatatcattga 320  Q
    |||||||||||||||| ||| || ||||| |||| |||||||||||||||||| ||||    
T  9990890 agagaaatagaagagaaagagatattattgttttttaaaaagacaaaaatatccttga 9990947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 33449342 - 33449371
Alignment:
Q  243 tttgatgtattgtttggtataagagaaata 272  Q
    ||||||||||||||||||||||||||||||    
T  33449342 tttgatgtattgtttggtataagagaaata 33449371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 30266047 - 30266011
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  30266047 tttgatgtagtgtttggtataagagaaagagaagaga 30266011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 43638458 - 43638422
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    |||||||||||||||||||||||||||| | ||||||    
T  43638458 tttgatgtattgtttggtataagagaaagaaaagaga 43638422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 341
Target Start/End: Original strand, 2430656 - 2430733
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  2430656 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttaataagacaacattataatttat 2430733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 37566316 - 37566362
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaa 310  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||    
T  37566316 agagaaatagaagagaaagaaatgtgattattttttaaaagacaaaa 37566362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 48402628 - 48402676
Alignment:
Q  265 gagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 313  Q
    |||||||||||||||||||||||   |||||||||||| ||||||||||    
T  48402628 gagaaatagaagagagagaaatgcatttatttttaaaaggacaaaaata 48402676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 42271103 - 42271153
Alignment:
Q  263 aagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 313  Q
    ||||||||||||||||| |||| |||  |||||||||||||||| ||||||    
T  42271103 aagagaaatagaagagaaagaagtgtgtttatttttaaaaagactaaaata 42271153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 34996794 - 34996758
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    |||||||||||||||||||||||||| | ||||||||    
T  34996794 tttgatgtattgtttggtataagagagaaagaagaga 34996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 37031323 - 37031375
Alignment:
Q  261 ataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 313  Q
    |||||||||||||||||||||||| |||  ||| |||| || |||||||||||    
T  37031323 ataagagaaatagaagagagagaattgtgtttactttttaatagacaaaaata 37031375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 41816654 - 41816706
Alignment:
Q  264 agagaaatagaagagagagaaatgttatt-atttttaaaaagacaaaaatatc 315  Q
    ||||||||||||||||||||| |||  || ||| |||||||||||||||||||    
T  41816654 agagaaatagaagagagagaagtgtgcttaattcttaaaaagacaaaaatatc 41816706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 49233301 - 49233224
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49233301 agagaaatagaagagaaacaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattataatttat 49233224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 6447103 - 6447185
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataaga 325  Q
    |||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  6447103 tttgatgtattgtttggtataagagaaagaagagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataaga 6447185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 45781920 - 45781824
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| ||||||| |||  ||||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||    
T  45781920 tttgatgtattgtttgatataagaaaaa--gaagagaaagaaatgttattatttttaaaaagtcaaaaatatccttgataagataacattacaatttat 45781824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 49889279 - 49889354
Alignment:
Q  266 agaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49889279 agaaatagaagagaaataaatgctattatttttaaaaagacaaaaatatctttgataagacaacattataatttat 49889354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 53921970 - 53921887
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttataattta 347  Q
    |||||||||||||| | | ||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||| |||||    
T  53921970 agagaaatagaagaaaaaaaaatgttattattttcaaaaggataaaaatatccttgataagacaacattataatttatgattta 53921887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 8281533 - 8281456
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattga 320  Q
    |||||||| ||| | ||||||||||||||| || ||| | | |||||||||||||||||| |||||||||||| ||||    
T  8281533 tttgatgtgttgatcggtataagagaaatataaaagaaaaatatgttattatttttaaaaggacaaaaatatctttga 8281456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 30658170 - 30658062
Alignment:
Q  264 agagaaatagaagagagagaaatgttattattttt-aaaaagacaaaaatatcattgataagacaacattataa-tttataatttataattaattaaata 361  Q
    |||||||||||||| | ||| |||||||| ||||| ||||||||||||||||| |||||||||  | |  | ||  ||||||||||| |||||||||| |    
T  30658170 agagaaatagaagataaagagatgttattgttttttaaaaagacaaaaatatccttgataagatcataagacaacattataatttatgattaattaaaaa 30658071  T
Q  362 accaatggc 370  Q
    |||||||||    
T  30658070 accaatggc 30658062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 470144 - 470108
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    |||||||||||||||||||||||||||  ||||||||    
T  470144 tttgatgtattgtttggtataagagaatgagaagaga 470108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 52399321 - 52399285
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  52399321 tttgatgtagtgtttggtataagagaaagagaagaga 52399285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 7529793 - 7529863
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattat 334  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7529793 agagaaatagaagagaaagaaatgttattatttttaaaaagacaaaaatatccttgataagacaacattat 7529863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 35468033 - 35467956
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  35468033 agagaaatagaagagaaagaaatgctattatttttaaaaagacaaaaatatccttgataaaacaacattataatttat 35467956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 9269568 - 9269645
Alignment:
Q  266 agaaatagaagagagagaaatgttattattttt--aaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    |||||||||||| | | ||||||||||||||||  | ||| |||||||||   |||||||||||||||||||||||||    
T  9269568 agaaatagaagataaataaatgttattatttttttataaaaacaaaaataatcttgataagacaacattataatttat 9269645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 33084626 - 33084683
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgtt-attattttta 299  Q
    |||||||||||||||||| ||||||||||| |||||| ||||| ||| ||||||||||    
T  33084626 tttgatgtattgtttggtttaagagaaataaaagagaaagaaacgttaattattttta 33084683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 35468279 - 35468330
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 315  Q
    |||||||| |||||||||||| |||  ||| |||||||||||||||||||||    
T  35468279 agagaaatggaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 35468330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 27878687 - 27878724
Alignment:
Q  244 ttgatgtattgtttggtataagagaaatagaagagaga 281  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  27878687 ttgatgtattgtttgatataagagagatagaagagaga 27878724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 11447246 - 11447198
Alignment:
Q  265 gagaaatagaagagagagaaatgttattatttttaaaaagacaaaaata 313  Q
    |||||||||||||||||||||||   |||||||| ||| ||||||||||    
T  11447246 gagaaatagaagagagagaaatgcatttatttttgaaaggacaaaaata 11447198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 341
Target Start/End: Original strand, 5077182 - 5077275
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatcattgataagacaacattataatttat 341  Q
    ||||||||||||||||||||||||||||  ||||||| | ||||   |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5077182 tttgatgtattgtttggtataagagaaa--gaagagaaaaaaat---attatttttaaaaagacaaaaatatccttgataagacaacatcataatttat 5077275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 3462684 - 3462720
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  3462684 tttgatgtagtgtttggtataagagaaagagaagaga 3462720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 4681569 - 4681605
Alignment:
Q  243 tttgatgtattgtttggtataagagaaatagaagaga 279  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  4681569 tttgatgtgttgtttggtataagagagatagaagaga 4681605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 8588501 - 8588553
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatt-tttaaaaagacaaaaatatc 315  Q
    |||||||||||||||| ||| |||||| |||| ||||||||||||| ||||||    
T  8588501 agagaaatagaagagaaagagatgttactattctttaaaaagacaataatatc 8588553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 27899082 - 27899133
Alignment:
Q  264 agagaaatagaagagagagaaatgttattatttttaaaaagacaaaaatatc 315  Q
    ||||||||||||||||||||| |||  ||| |||||||||||||||||||||    
T  27899082 agagaaatagaagagagagaagtgtgtttaattttaaaaagacaaaaatatc 27899133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University