View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_high_38 (Length: 339)
Name: NF14289_high_38
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 971200 - 971443
Alignment:
| Q |
11 |
cagcacagattatgaaaagataagggggcagaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatgga |
110 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
971200 |
cagcacaaattatgaaaagataaggggagagaggatctccttgtctaattccccttttaggtttaaacatagtagatggggatccatttataagaatgga |
971299 |
T |
|
| Q |
111 |
aaaagatacacttctgacacacaacattatagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactcta |
210 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
971300 |
aaaagacacacttctgacacacagcattatagttttaacaattttaatagggaagcccatagtgagaagagtgctttctaggaaatcccattccactcta |
971399 |
T |
|
| Q |
211 |
tcatatgctttttccatatcaagcttaattccaaccacgccaga |
254 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
971400 |
tgatatgctttttccatatcaagcttaattccaaccacaccaga |
971443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 43136247 - 43136452
Alignment:
| Q |
40 |
agaggatctccttgtctaatttcccttttaggtttaaacatagtagatggggattcatttataagaatggaaaaagatacacttctgacacacaacatta |
139 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||||||| ||||||| | ||| |||| || ||||| |||||||| |||||||||||||| | || | |
|
|
| T |
43136247 |
agagggtctccttgtctaattcctctcttaggtttaaaagtagtagaatgagatccattaattagaatagaaaaagagacacttctgacacaaagcacga |
43136346 |
T |
|
| Q |
140 |
tagttttaacaattttaataggaaagtccatagtgagaagagtgctttctaggaaatcccattccactctatcatatgctttttccatatcaagcttaat |
239 |
Q |
| |
|
|||| || |||| ||||||||||| |||| |||| ||||| ||||| |||||||| |||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
43136347 |
tagtattgacaagattaataggaaaacccatggtgaagagagttgattctaaaaaatcccactccactctgtcatatgccttttccagatcaagcttaat |
43136446 |
T |
|
| Q |
240 |
tccaac |
245 |
Q |
| |
|
|||||| |
|
|
| T |
43136447 |
tccaac |
43136452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 971468 - 971518
Alignment:
| Q |
271 |
aaaatgaaaggcttcataagctataatggtgttatcagaaataagcttgtt |
321 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
971468 |
aaaatgaaagacttcataagctagaatggtgttatcagaaataagcatgtt |
971518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University