View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_4 (Length: 654)
Name: NF14289_high_4
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 637
Target Start/End: Complemental strand, 16013064 - 16012433
Alignment:
| Q |
17 |
cacagagttcgagcaagtgtgccctacgtctccgacaatagagtggctactgtagtttctactatgaaactcttacagttgcagattacaagttatgttt |
116 |
Q |
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| T |
16013064 |
cacagagttcgagcaagtgtgcc-tacgactccgacaatagagtggctactgtagtttctactatgaaattcttgcagttgcagattacaagttatgttt |
16012966 |
T |
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| Q |
117 |
aaatactacggtcaagtttacccttaaattccaatgcgaggggcttcgcccactataccccaaccctcctaatcgtaacccaacatatgtatgggccaaa |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16012965 |
aaatactacggtcaagtttacccttaaattgcaatgcgagggacttcgcccactataccccaaccctcctaatcttaacccaacatatgtatgggccaaa |
16012866 |
T |
|
| Q |
217 |
cttaagcggaaggcaatctagctgcactacgctcgttgcagtttcagctccattcactccgctacgctattctcaagcgcctgcccgct----------t |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| | |
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| T |
16012865 |
cttaagcggaaggcactctagctgcactacgctcgttgcagtttcagctccattcacttcgctacgctattctcaattgcctgctcgcttattagcgaat |
16012766 |
T |
|
| Q |
307 |
atgagcaatactcaacaat--tacataaatacatatgtacgtttcttgcaatataatttataaacaaaacttttcgtggtnnnnnnnnntcacctgtgac |
404 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16012765 |
atgagcaatactcaacaataatacataaatacacatgtacgtttcttgcaatataatttataaacaaaacttttcgtggt-aaaaaaaatcacctgtgac |
16012667 |
T |
|
| Q |
405 |
agcctgaaattacaaagttttggcttcccttgtcgactatacttaactaactgggttcctctttttaatgtaatgaatgccttcacacaaaaacataaaa |
504 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16012666 |
agcctgaaattacaaagtttcggcttcccttgtcgactatacttaactaactgggttcctctttttaatgtaatgaatgccttcacacaaaaacataaaa |
16012567 |
T |
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| Q |
505 |
ttaagtaagtggagcacctaagaaacataatatttagtatatcatatcaagtta-taatcattttgaaattcatattgcagatatgtaaactactatata |
603 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16012566 |
ttaagtaagtggagcacctaagcaacataatatttagtatatcatatcaagttattaatcattttgaaattcatattgcagatatgtaaactactatata |
16012467 |
T |
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| Q |
604 |
aattcaatggctacataatccctagaatgatgat |
637 |
Q |
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| T |
16012466 |
aattcaatggctacataatccctagaatgatgat |
16012433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 13855051 - 13855090
Alignment:
| Q |
98 |
cagattacaagttatgtttaaatactacggtcaagtttac |
137 |
Q |
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| T |
13855051 |
cagattacaacttatgtttaaatactacggtctagtttac |
13855090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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