View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_42 (Length: 323)

Name: NF14289_high_42
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_42
NF14289_high_42
[»] chr6 (4 HSPs)
chr6 (1-316)||(10855564-10855878)
chr6 (1-39)||(6468833-6468871)
chr6 (1-51)||(12676522-12676572)
chr6 (1-42)||(30748029-30748070)
[»] chr5 (7 HSPs)
chr5 (1-51)||(19182971-19183021)
chr5 (1-42)||(16611758-16611799)
chr5 (1-51)||(21069310-21069360)
chr5 (1-51)||(28591166-28591216)
chr5 (2-40)||(546089-546127)
chr5 (1-42)||(9537053-9537094)
chr5 (5-42)||(14891199-14891236)
[»] chr8 (5 HSPs)
chr8 (1-49)||(33314884-33314932)
chr8 (1-42)||(41754847-41754888)
chr8 (1-40)||(24198966-24199005)
chr8 (1-42)||(5965494-5965535)
chr8 (1-42)||(8569438-8569479)
[»] chr4 (4 HSPs)
chr4 (1-40)||(54574457-54574496)
chr4 (1-42)||(31844752-31844793)
chr4 (1-42)||(4701795-4701836)
chr4 (1-42)||(42391940-42391981)
[»] chr7 (13 HSPs)
chr7 (1-51)||(8048836-8048886)
chr7 (1-51)||(8374935-8374985)
chr7 (1-39)||(24934837-24934875)
chr7 (1-51)||(48646070-48646120)
chr7 (2-51)||(21062838-21062887)
chr7 (1-42)||(34704939-34704980)
chr7 (4-51)||(35727720-35727767)
chr7 (1-51)||(2677838-2677888)
chr7 (1-51)||(24935742-24935792)
chr7 (1-51)||(42477402-42477452)
chr7 (1-51)||(44333160-44333210)
chr7 (1-49)||(5930184-5930232)
chr7 (4-40)||(34888978-34889014)
[»] chr3 (7 HSPs)
chr3 (1-51)||(3671059-3671109)
chr3 (1-40)||(2592059-2592098)
chr3 (1-40)||(11773103-11773142)
chr3 (1-56)||(19331124-19331179)
chr3 (1-40)||(55388105-55388144)
chr3 (1-37)||(2591662-2591698)
chr3 (1-41)||(45600990-45601030)
[»] chr1 (9 HSPs)
chr1 (1-51)||(5782435-5782485)
chr1 (4-35)||(18897945-18897976)
chr1 (1-40)||(32665822-32665861)
chr1 (1-51)||(7945606-7945656)
chr1 (1-35)||(39977369-39977403)
chr1 (2-40)||(52439511-52439549)
chr1 (1-42)||(21619653-21619694)
chr1 (1-53)||(1001173-1001225)
chr1 (1-33)||(3117688-3117720)
[»] chr2 (7 HSPs)
chr2 (1-42)||(11985721-11985762)
chr2 (1-51)||(31091579-31091629)
chr2 (1-51)||(32766291-32766341)
chr2 (1-35)||(38853792-38853826)
chr2 (2-35)||(43380617-43380650)
chr2 (6-42)||(14887555-14887591)
chr2 (1-41)||(15442023-15442063)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-40)||(116087-116126)
[»] scaffold0767 (1 HSPs)
scaffold0767 (1-49)||(5622-5670)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 10855878 - 10855564
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtcatgaactgactatttactctaattataagctattcatacaaaggagatca 100  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10855878 ttgtatttaatcctgagtcaaagacctttgtaacagcaaggtccaaaatcaggaactgactatttactctaattataagctattcatacaagggagatca 10855779  T
Q  101 cgtaagtataaagttaagtgcacgatagatctgaaaatttgatgagacgaagggacaaacatgatctgacgtctcaattgtaagcctctataatatatag 200  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||     
T  10855778 cgtaactacaaagttaagtgcatgatagatctgaaaatttgatgagacgaagagacaaacatgatctgacgtct-aattgtaagcctctacaatatataa 10855680  T
Q  201 gggaaaactaaaagtagacacaaggtgcataagtggacgcaataaatagctctttaggaattcgaaactcaattgagaaacaataacacagaaatttact 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10855679 gggaaaactaaaagtagacacaaggtgcataagtggacacaataaatagctctttaggaattcgaaactcaattgagaaacaataacacagaaatttact 10855580  T
Q  301 caaggaccctaatatt 316  Q
    |||||| |||||||||    
T  10855579 caaggatcctaatatt 10855564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6468833 - 6468871
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcga 39  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  6468833 ttgtatttaatcatgagtcagggacctttgtgacagcga 6468871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12676522 - 12676572
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||| |||||||| |||||||| |||||| || |||||    
T  12676522 ttgtatttaatcctgagacagagaccattgtgacaacgaggtgcagagtca 12676572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30748070 - 30748029
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||||| |||||| ||||| ||||||||||||||    
T  30748070 ttgtatttaatcctaagtcagggacctatgtgacagcgaggt 30748029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19183021 - 19182971
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  19183021 ttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagtca 19182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16611799 - 16611758
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  16611799 ttgtatttaatcctgagtcagagacctatgtgacagcgaggt 16611758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21069360 - 21069310
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||||||||| ||||||| |||||| || |||||    
T  21069360 ttgtatttaatcctgagtcagagacctctgtgacaacgaggtgcagagtca 21069310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28591166 - 28591216
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||| ||||| |||||||||||||| || |||||    
T  28591166 ttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtca 28591216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 546089 - 546127
Alignment:
Q  2 tgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  546089 tgtatttaatcctgagtcagggacctatgtgacagcgag 546127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9537094 - 9537053
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||| || |||||||||||| ||||||||||||||    
T  9537094 ttgtatttaattctaagtcagagacctatgtgacagcgaggt 9537053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 14891199 - 14891236
Alignment:
Q  5 atttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  14891199 atttaatcatgagtcagagacctatgtgacagcgaggt 14891236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33314932 - 33314884
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagt 49  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  33314932 ttgtatttaatcttgagtcagagacctttgagacagcgaggtgcaaagt 33314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41754847 - 41754888
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  41754847 ttgtatttaatcctgagtcagagatctatgtgacagcgaggt 41754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24199005 - 24198966
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  24199005 ttgtatttaatcctgaatcaaagacctttgtgacagcgag 24198966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5965494 - 5965535
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||    
T  5965494 ttgtatttaatcctgagtcagggacatttgtgacaacgaggt 5965535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8569479 - 8569438
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  8569479 ttgtatttaatcatgagtcaaagacctttgtgagagcgaggt 8569438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 54574496 - 54574457
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  54574496 ttgtatttaatcctgagtcagagacctatgtgacagcgag 54574457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31844793 - 31844752
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  31844793 ttgtatttaatcctgagtcagggacctatgtgacagcgaggt 31844752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4701836 - 4701795
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||| | ||||| |||||||||||||||||||||    
T  4701836 ttgtatttaatcataagtcatagacctttgtgacagcgaggt 4701795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42391940 - 42391981
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||| |||||||||||||| |||||||| |||||    
T  42391940 ttgtatttaatcatgagtcagagacctatgtgacagtgaggt 42391981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8048836 - 8048886
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||    
T  8048836 ttgtatttaatcttgagtcagagacctttgtgtcagcgaggtgcagagtca 8048886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8374985 - 8374935
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||| ||||||||||||||| |||||||||||||| || |||||    
T  8374985 ttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtca 8374935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24934875 - 24934837
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcga 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24934875 ttgtatttaatcctaagtcagagacctttgtgacagcga 24934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48646120 - 48646070
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||| ||||| |||||||||||||| || |||||    
T  48646120 ttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtca 48646070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 21062887 - 21062838
Alignment:
Q  2 tgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||||||||||  ||||||| |||||||||||| ||||||||    
T  21062887 tgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtca 21062838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34704980 - 34704939
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  34704980 ttgtatttaatcctgagtcagaggcctttgtgacaacgaggt 34704939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 35727767 - 35727720
Alignment:
Q  4 tatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||||||||| ||||| |||||||||||||| || |||||    
T  35727767 tatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtca 35727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2677838 - 2677888
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||| ||||||| |||||||||||||| |||||| || |||||    
T  2677838 ttgtatttaatcatgagtcatagacctttgtgacaacgaggtacagagtca 2677888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24935742 - 24935792
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||| ||||||||||||||| ||||||||| |||| | ||||||||    
T  24935742 ttgtatttactcctgagtcagagacatttgtgacaacgagatacaaagtca 24935792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42477452 - 42477402
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||||||||| || |||| |||||| || |||||    
T  42477452 ttgtatttaatcctgagtcagagacctatgcgacaacgaggtgcagagtca 42477402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44333210 - 44333160
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||| |||||||| ||||| |||||||||||||| || |||||    
T  44333210 ttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtca 44333160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5930184 - 5930232
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagt 49  Q
    |||||||||||||||||| || ||||||||||| ||||| || ||||||    
T  5930184 ttgtatttaatcctgagttagggacctttgtgatagcgaagtgcaaagt 5930232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 34888978 - 34889014
Alignment:
Q  4 tatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  34888978 tatttaatcatgagtgagagacctttgtgacagcgag 34889014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3671109 - 3671059
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  3671109 ttgtatttaattctgagtcagagacctttgtgatagagaggtgcaaagtca 3671059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2592059 - 2592098
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  2592059 ttgtatttaatcctgagtcagggacctatgtgacagcgag 2592098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11773103 - 11773142
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  11773103 ttgtatttaatcctgagtcagggacctatgtgacagcgag 11773142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19331179 - 19331124
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtcatgaac 56  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| || ||||| ||||    
T  19331179 ttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcaggaac 19331124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 55388144 - 55388105
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  55388144 ttgtatttaatcctgagtcagagacctatatgacagcgag 55388105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2591698 - 2591662
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagc 37  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  2591698 ttgtatttaatcctgagtcagggacctatgtgacagc 2591662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45600990 - 45601030
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgagg 41  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  45600990 ttgtatttaatcctgaatcagggacctatgtgacagcgagg 45601030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5782485 - 5782435
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||| |||||||||||||| |||||||||||||| || |||||    
T  5782485 ttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtca 5782435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 18897945 - 18897976
Alignment:
Q  4 tatttaatcctgagtcagagacctttgtgaca 35  Q
    ||||||||||||||||||||||||||||||||    
T  18897945 tatttaatcctgagtcagagacctttgtgaca 18897976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32665822 - 32665861
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  32665822 ttgtatttaatcatgagtcagagacctatgtgacagcgag 32665861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7945606 - 7945656
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    |||||||||||||||||||||  |||| |||||||||||||| || |||||    
T  7945606 ttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtca 7945656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39977403 - 39977369
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgaca 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  39977403 ttgtatttaatcctgagtcagagacatttgtgaca 39977369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 52439549 - 52439511
Alignment:
Q  2 tgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  52439549 tgtatttaatcctgagccagagacctatgtgacagcgag 52439511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21619653 - 21619694
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||||||||||| ||||  |||||||||||||||    
T  21619653 ttgtatttaatcctgagtcaaagactcttgtgacagcgaggt 21619694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1001225 - 1001173
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtcatg 53  Q
    ||||||||||||| ||||||  |||||||||| || |||||| ||||||||||    
T  1001225 ttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatg 1001173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3117720 - 3117688
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtga 33  Q
    |||||||||||| ||||||||||||||||||||    
T  3117720 ttgtatttaatcttgagtcagagacctttgtga 3117688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11985762 - 11985721
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  11985762 ttgtatttaatcctgagtcagagacctttataacagcgaggt 11985721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31091579 - 31091629
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| || |||||    
T  31091579 ttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtca 31091629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32766291 - 32766341
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagtca 51  Q
    ||||||||||||||||||||| ||||| ||||||| |||||| || |||||    
T  32766291 ttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtca 32766341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38853826 - 38853792
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgaca 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  38853826 ttgtatttaatcctgagtcagagacctttatgaca 38853792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 43380650 - 43380617
Alignment:
Q  2 tgtatttaatcctgagtcagagacctttgtgaca 35  Q
    ||||||||||| ||||||||||||||||||||||    
T  43380650 tgtatttaatcatgagtcagagacctttgtgaca 43380617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 14887555 - 14887591
Alignment:
Q  6 tttaatcctgagtcagagacctttgtgacagcgaggt 42  Q
    |||||||||||||||| |||||| |||||||||||||    
T  14887555 tttaatcctgagtcagggaccttcgtgacagcgaggt 14887591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15442023 - 15442063
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgagg 41  Q
    |||||||||||||||||||||  | ||||||||||||||||    
T  15442023 ttgtatttaatcctgagtcaggaatctttgtgacagcgagg 15442063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 116126 - 116087
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgag 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  116126 ttgtatttaatcctgagtcagggacctatgtgacagcgag 116087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5670 - 5622
Alignment:
Q  1 ttgtatttaatcctgagtcagagacctttgtgacagcgaggtccaaagt 49  Q
    ||||||||||| ||||||||||||| ||||| ||| |||||| ||||||    
T  5670 ttgtatttaattctgagtcagagacatttgtcacaacgaggtgcaaagt 5622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University