View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_high_45 (Length: 307)
Name: NF14289_high_45
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 19011144 - 19011308
Alignment:
| Q |
19 |
ataggtctaagtaactctaaatagaggagatattactacacttgcnnnnnnnnnnnttaaacagatggggtgcagatggatttgcagcaccctaattaga |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19011144 |
ataggtctaagtaactctaaacagaggagatataactacacctgcaaaaaaaaaaattaaacagatggggtgcagatggatttgcaacaccctaattaga |
19011243 |
T |
|
| Q |
119 |
ttagattaaaaaagaaagattacaagagaaatggggcacacaaagcctaacccaacaagagtaat |
183 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19011244 |
ttagattaaaaaagaaaaattacaagagaaatggggtacacaaagcctaacccaacaagagtaat |
19011308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 19011371 - 19011413
Alignment:
| Q |
247 |
gggttcgcaaacacaaaaacctatccgaggcaaatcagtatat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
19011371 |
gggttcgcaaacacaaaaacctatccgaggtaaatcggtatat |
19011413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University