View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_47 (Length: 303)

Name: NF14289_high_47
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_47
NF14289_high_47
[»] chr5 (3 HSPs)
chr5 (19-178)||(9185090-9185249)
chr5 (230-290)||(9185029-9185089)
chr5 (189-229)||(16293991-16294031)
[»] chr7 (2 HSPs)
chr7 (192-236)||(12306673-12306717)
chr7 (201-237)||(29406996-29407032)
[»] chr1 (1 HSPs)
chr1 (192-236)||(32088675-32088719)
[»] chr6 (5 HSPs)
chr6 (156-236)||(25195466-25195550)
chr6 (189-238)||(30926879-30926928)
chr6 (192-236)||(6653748-6653792)
chr6 (192-236)||(7280429-7280473)
chr6 (192-236)||(33136585-33136629)
[»] chr3 (2 HSPs)
chr3 (192-235)||(52925714-52925757)
chr3 (186-227)||(44958717-44958758)
[»] chr2 (3 HSPs)
chr2 (193-236)||(43501083-43501126)
chr2 (196-236)||(7630359-7630399)
chr2 (192-236)||(9943362-9943406)
[»] scaffold0360 (1 HSPs)
scaffold0360 (192-236)||(13293-13337)
[»] chr8 (1 HSPs)
chr8 (196-236)||(26100249-26100289)
[»] chr4 (2 HSPs)
chr4 (192-236)||(39211074-39211118)
chr4 (192-236)||(46344933-46344977)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 9185249 - 9185090
Alignment:
Q  19 acagtatgtgtgtaaagaaaatattattagtgctaaaaataaagatttgtttttacataatgtatacgtatcatttcatttgtaagaagcatttttctac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9185249 acagtatgtgtgtaaagaaaatattattagtgctaaaaataaagatttgtttttacataatgtatacgtatcatttcatttgtaagaagcatttttctac 9185150  T
Q  119 tgcaaacaaatcccggcaatcaaacaacttagccatgtttggttccacctctagaggagc 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9185149 tgcaaacaaatcccggcaatcaaacaacttagccatgtttggttccacttctagaggagc 9185090  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 9185089 - 9185029
Alignment:
Q  230 tagaattagaaattaaagtttgtggttctagaattgattttaacatttaaacttatcgttc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9185089 tagaattagaaattaaagtttgtggttctagaattgattttaacatttaaatttatcgttc 9185029  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 16294031 - 16293991
Alignment:
Q  189 gaagtgtataattgattctaacatgtttggttgctctcaag 229  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  16294031 gaagtgtagaattgattttaacatgtttggttgctcacaag 16293991  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 12306673 - 12306717
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||    
T  12306673 gtgtagaattgattttgacatgtttggttgctctcaagtagaatt 12306717  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 29406996 - 29407032
Alignment:
Q  201 tgattctaacatgtttggttgctctcaagtagaatta 237  Q
    |||||||||||||||||||||||||  ||||||||||    
T  29406996 tgattctaacatgtttggttgctcttgagtagaatta 29407032  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 32088719 - 32088675
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||    
T  32088719 gtgtaaaattgattttgacatgtttggttgctctcaagtagaatt 32088675  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 25195550 - 25195466
Alignment:
Q  156 tttggttccacctctagaggagcaaaaattgtt----gaagtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||||||||| ||||||||| | ||||||| |    || |||||||||||||||| ||||||||||||||| || |||| ||||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataatt 25195466  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 30926928 - 30926879
Alignment:
Q  189 gaagtgtataattgattctaacatgtttggttgctctcaagtagaattag 238  Q
    |||||||||||||| || | ||||||||||| |||||| |||||||||||    
T  30926928 gaagtgtataattgcttttgacatgtttggtcgctctcgagtagaattag 30926879  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 6653748 - 6653792
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||||||||||||| | || |||||||||||| ||||||||||||    
T  6653748 gtgtataattgattttgacttgtttggttgctgtcaagtagaatt 6653792  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 7280429 - 7280473
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  7280429 gtgtaaaattaattctcacatgtttggttgctttcaagtagaatt 7280473  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 33136629 - 33136585
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||||||||||||| | |||||||||||||||||| |||| ||||    
T  33136629 gtgtataattgattttgacatgtttggttgctctcgagtataatt 33136585  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 52925757 - 52925714
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaat 235  Q
    |||||||||||||| | ||||||||||||||||||| |||||||    
T  52925757 gtgtataattgattttgacatgtttggttgctctcacgtagaat 52925714  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 44958758 - 44958717
Alignment:
Q  186 gttgaagtgtataattgattctaacatgtttggttgctctca 227  Q
    ||||| ||||| |||||||||| |||||||||||||||||||    
T  44958758 gttgaggtgtagaattgattctgacatgtttggttgctctca 44958717  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 43501083 - 43501126
Alignment:
Q  193 tgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||    
T  43501083 tgtagaattgattctgacatgtttggttgctttcaagtagaatt 43501126  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 7630359 - 7630399
Alignment:
Q  196 ataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||||||||| | ||||||||||||||| ||||||||||||    
T  7630359 ataattgattttgacatgtttggttgctttcaagtagaatt 7630399  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 9943362 - 9943406
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| |||||||| |||||||||||||||||||||  |||||||    
T  9943362 gtgtaaaattgattttaacatgtttggttgctctcacttagaatt 9943406  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 13337 - 13293
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| ||||||| |||||||||||||||||| | ||||||||||    
T  13337 gtgtaaaattgatgctaacatgtttggttgctttgaagtagaatt 13293  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 26100289 - 26100249
Alignment:
Q  196 ataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    ||||| ||||||||||||||||||||||  |||||||||||    
T  26100289 ataatcgattctaacatgtttggttgcttccaagtagaatt 26100249  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 39211118 - 39211074
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||||||||||||||| ||||||||||||||| || |||| ||||    
T  39211118 gtgtataattgattctgacatgtttggttgctatcgagtaaaatt 39211074  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 46344977 - 46344933
Alignment:
Q  192 gtgtataattgattctaacatgtttggttgctctcaagtagaatt 236  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||    
T  46344977 gtgtataattaattctgacatgtttggttgctttcaagtataatt 46344933  T

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