View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_49 (Length: 295)
Name: NF14289_high_49
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 34341046 - 34340784
Alignment:
| Q |
14 |
aatattaaataaataaataaatcacattgtttgcgtcatcctaagtccatttagatctatnnnnnnnnnnnnngtacagaacagagcagcctagcttacc |
113 |
Q |
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| T |
34341046 |
aatattaaataaataaataaatcacattgtttgcgtcatcctaagtccatttagatctatacacacacaca--gtacagaacagagcagcctagcttacc |
34340949 |
T |
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| Q |
114 |
tcatctcagctgcagaactttgaatggaatctcagaaatttttgagatctcaaaaaaccactttctcaatcccaaagttaccaacatcaccaacattaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340948 |
tcatctcagctgcagaactttgaatggaatctcagaaatttttgagatctcaaaaaaccactttctcaatcccaaagttaccaacatcaccaacattaaa |
34340849 |
T |
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| Q |
214 |
tacttagcaaaattaatttatcaattctaacataatattaatttctgaaaatcataggttacaag |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34340848 |
tacttagcaaaattaatttatcaattctaacataatattaatttctgaaaatcataggttacaag |
34340784 |
T |
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