View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_5 (Length: 653)
Name: NF14289_high_5
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 161 - 624
Target Start/End: Original strand, 12807710 - 12808166
Alignment:
| Q |
161 |
taacaattaaataacttacaagatctatggtgtaatttagccaattatataccactgcttttattttggaataccactaacacaagtatggcacttgaaa |
260 |
Q |
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| T |
12807710 |
taacaattaaataacttaaaagatctctggtgtaatttagccaattatataccactgcttttattttggaataccactaacacaagtatggcacttgaaa |
12807809 |
T |
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| Q |
261 |
cccaaaactaattagannnnnnnnn--agtgcatacatttacaaattagtaacaaataatattgnnnnnnnngctactaaaacattatcttacgtcaatt |
358 |
Q |
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| T |
12807810 |
cccaaaactaattagatttttttttttagtgcatacatttacaaattagtaacaaataatattgttttttt--ctactaaaacattatcttacgtcaatt |
12807907 |
T |
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| Q |
359 |
tttatgaatattaaagaccatattatatatactcatctaattaattctaagtgtagtaaataaatatatgcaaaaagttgaaggaaatttcatataccct |
458 |
Q |
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| T |
12807908 |
tttatgaacattaaagaccatat-------actcatctaattaattataagtgtagtaaataaatatatgcaaaaagttgaaggaaatttcacgtaccct |
12808000 |
T |
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| Q |
459 |
atttgcaaaaagggttctgcttgaatatccatactcatattcatagggttagtttgaggctgctgaaaggtaaagttgcaatttccagcaactgaattag |
558 |
Q |
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| T |
12808001 |
atttgcaaaaagggttctgcttggatatccatactcatattcatagggttagtttgaggctgctgaaaggtaaagttgcaatttccagcaactgaattag |
12808100 |
T |
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| Q |
559 |
agctccacaaactttccattgctttgagattaaatccctctccttcaagctgaaaatggagttttg |
624 |
Q |
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| T |
12808101 |
agctccataaactttccattgctttaagattaaatccctctccttcaagctgaaaatgcagttttg |
12808166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 12807526 - 12807688
Alignment:
| Q |
1 |
taacattagatttatatattttaccattaaaaactcaaccattaaaattatataagttaaattatatcggaggtccttcaagttatttaattataacatt |
100 |
Q |
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| T |
12807526 |
taacattagatttatatattttaccattaaaaactcaaccattaaaattatataggttaaattatatcggaggtcttttaagttatttaattataacatt |
12807625 |
T |
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| Q |
101 |
caagtcctttaagtattttttgtaggaccaaaatggtacataaaggacctaagtggtatgtaa |
163 |
Q |
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| T |
12807626 |
caggtcctttaagtattttttgtaggacctaaatggtacataaaggacctaagtggtatgtaa |
12807688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 622
Target Start/End: Complemental strand, 28475793 - 28475727
Alignment:
| Q |
556 |
tagagctccacaaactttccattgctttgagattaaatccctctccttcaagctgaaaatggagttt |
622 |
Q |
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| T |
28475793 |
tagaactccacaagctttcaatagctttaagattaaatccatctgattcaagctgaaaatgaagttt |
28475727 |
T |
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