View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_54 (Length: 283)
Name: NF14289_high_54
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 6865067 - 6864922
Alignment:
| Q |
16 |
atatctgtcatctgcaattgtttaagaaaagatcttccatacactcccatttggagtttcttaatttcatgtttctgtccaaaattcatgcatctaattt |
115 |
Q |
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| T |
6865067 |
atatctgtcatctgcaattgtttaagagaagatcttccataccctcccatttggagtttcttaatttcatgtttctgtccaaaattcatgcatctaattt |
6864968 |
T |
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| Q |
116 |
ttctcatttctttcattgaggggtgagattttgctttctgagagtt |
161 |
Q |
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| T |
6864967 |
ttctcctttctttcattgaggggtgagattttgctttctgagagtt |
6864922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 256
Target Start/End: Complemental strand, 6864888 - 6864800
Alignment:
| Q |
170 |
gtcagttcttagcggtggtgatttggcaacattgaggatggagat--tgatggataatgaatcacagagaattacacgacgaagacgga |
256 |
Q |
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| T |
6864888 |
gtcagttcttagcggtggttatttggcaacattgaggatggagattgtgatggataatggatcacagagaattacacgacgaagacgga |
6864800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 33856006 - 33855861
Alignment:
| Q |
16 |
atatctgtcatctgcaattgtttaagaaaagatcttccatacactcccatttggagtttcttaatttcatgtttctgtccaaaattcatgcatctaattt |
115 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856006 |
atatctgtcatctgcaattgttttagagaagatcttccataccctcccacttggagtttcttaatttcatgtttctgtccaaaattcatgcatctaattt |
33855907 |
T |
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| Q |
116 |
ttctcatttctttcattgaggggtgagattttgctttctgagagtt |
161 |
Q |
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| T |
33855906 |
ttctcctttctttcattgaggggtgagattttgctttctgagagtt |
33855861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 33855824 - 33855723
Alignment:
| Q |
157 |
gagttctgccaccgtcagttcttagcggtggtgatttggcaacattgaggatggagat--tgatggataatgaatcacagagaattacacgacgaagacg |
254 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
33855824 |
gagttctgccacagtcagttcttagcggtggtgatttggcaacattgaggatggagattgtgatggataatggatcacagagaattacacgacgaagacg |
33855725 |
T |
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| Q |
255 |
ga |
256 |
Q |
| |
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|| |
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| T |
33855724 |
ga |
33855723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 8244938 - 8244983
Alignment:
| Q |
45 |
agatcttccatacactcccatttggagtttcttaatttcatgtttc |
90 |
Q |
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| T |
8244938 |
agatcttccataccctctcatttggattttcttaatttcttgtttc |
8244983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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