View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_56 (Length: 273)
Name: NF14289_high_56
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 1075450 - 1075192
Alignment:
| Q |
1 |
gcacaatgatgccaatcacataaattaacggtttattcaaattcctctatgctacatagcgctagtattaaatagcatatcgtagaacaataatgataaa |
100 |
Q |
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| T |
1075450 |
gcacaatgatgccaatcacataaattaacggtttattcaaattcctctatgctacatagcgctagtattaaatagcatatcgtagaacaataatgataaa |
1075351 |
T |
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| Q |
101 |
ttcaaagtctactatgctttagcgctgatttagccgttatttgacaacattgcaccagcacttggcaaattgaatccctaacattgaaaggtggacttat |
200 |
Q |
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| T |
1075350 |
ttcaaattctactatgctttagcgctgatttagccgttatttgacaacattgcaccagcacttggcaaattgcatccctaacattgaaaggtggacttat |
1075251 |
T |
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| Q |
201 |
gtgtggactccaaatgataacttcactacactcaatgttgataactaaagtcccctttg |
259 |
Q |
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| T |
1075250 |
gtgtggactccaaatgataacttcactacactcaatgttgataactaaagtcccctttg |
1075192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 13016078 - 13016152
Alignment:
| Q |
176 |
ccctaacattgaaaggtggacttatgtgtggactccaaatgataacttcactacactcaatgttgataactaaag |
250 |
Q |
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| T |
13016078 |
ccctaacactgaaaggtgtacttaagtgtggactccaaatgatgatttaactacgatgaatgttgataactaaag |
13016152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 13015994 - 13016078
Alignment:
| Q |
69 |
taaatagcatatcgtagaacaataatgataaattcaaagtctactatgctttagcgctgatttagccgttatttgacaacattgcacc |
156 |
Q |
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| T |
13015994 |
taaatagcatatcatagaacaatagtcattaattcaaattctac---actttagcgttgatgtggacgttatttgaccacattgcacc |
13016078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 20869173 - 20869210
Alignment:
| Q |
112 |
ctatgctttagcgctgatttagccgttatttgacaaca |
149 |
Q |
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| T |
20869173 |
ctatgctatagcgctgatatagccgttatttgacaaca |
20869210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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