View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_60 (Length: 260)

Name: NF14289_high_60
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_60
NF14289_high_60
[»] chr8 (4 HSPs)
chr8 (1-99)||(13854007-13854105)
chr8 (150-242)||(13854107-13854199)
chr8 (1-86)||(13872858-13872943)
chr8 (120-243)||(40395575-40395699)
[»] chr6 (2 HSPs)
chr6 (136-235)||(7763826-7763925)
chr6 (129-237)||(9624914-9625027)
[»] chr4 (9 HSPs)
chr4 (101-237)||(39734598-39734734)
chr4 (168-237)||(21327896-21327965)
chr4 (136-223)||(1586940-1587026)
chr4 (171-234)||(36186508-36186571)
chr4 (136-199)||(30868264-30868327)
chr4 (86-243)||(25435639-25435796)
chr4 (138-195)||(5498485-5498542)
chr4 (168-240)||(28038537-28038609)
chr4 (168-220)||(33919250-33919302)
[»] chr7 (2 HSPs)
chr7 (136-236)||(32181992-32182092)
chr7 (170-237)||(39825912-39825979)
[»] chr1 (5 HSPs)
chr1 (120-234)||(18618553-18618666)
chr1 (95-239)||(16560722-16560866)
chr1 (95-237)||(47762735-47762867)
chr1 (137-234)||(3550575-3550670)
chr1 (161-243)||(24035193-24035275)
[»] chr3 (3 HSPs)
chr3 (92-237)||(31475229-31475372)
chr3 (152-220)||(9197015-9197083)
chr3 (204-252)||(52378584-52378632)
[»] chr5 (2 HSPs)
chr5 (174-243)||(12966963-12967032)
chr5 (171-237)||(2588387-2588453)
[»] chr2 (3 HSPs)
chr2 (95-179)||(16550209-16550293)
chr2 (155-242)||(35319308-35319395)
chr2 (136-234)||(23684091-23684186)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 13854007 - 13854105
Alignment:
Q  1 caaggtgtttaacatgttactacttatgttactgcatgttaaaataaacttactttatttacagttcagtccattaaactctaaaaaatatggaaaatg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854007 caaggtgtttaacatgttactacttatgttactgcatgttaaaataaacttactttatttacagttcagtccattaaactctaaaaaatatggaaaatg 13854105  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 13854107 - 13854199
Alignment:
Q  150 gcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatatgcc 242  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13854107 gcattggaaattgtgtgtatttatttcttaaaaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatgtgcc 13854199  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 13872858 - 13872943
Alignment:
Q  1 caaggtgtttaacatgttactacttatgttactgcatgttaaaataaacttactttatttacagttcagtccattaaactctaaaa 86  Q
    ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  13872858 caaggagtttaacctgctactacttatgttactgcatgttaaaataaacttactttatttacatttcagtccattaaactcaaaaa 13872943  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 40395699 - 40395575
Alignment:
Q  120 acatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaa-tttttcataataaatatttgcta 218  Q
    |||||||| ||||  ||||||| |||||| | |||||||||||||  ||||||||| ||| |||||||   ||||| ||||| |||||| ||||||  ||    
T  40395699 acatgttaagatatccaaaataaaaattatgtattggaaattgtgactatttatttttcatgaagttaaggattaatttttttataatagatatttatta 40395600  T
Q  219 ttaatagaattcttaacatatgccc 243  Q
    ||||| ||||||||||||| |||||    
T  40395599 ttaatggaattcttaacatgtgccc 40395575  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 7763925 - 7763826
Alignment:
Q  136 aaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaac 235  Q
    ||||||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  7763925 aaaatagaaataatgcattggaaattgtgtctatttatttctcatgaagttaaaaattaatttttcataataaatatttgttattaatggaattcttaac 7763826  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 9625027 - 9624914
Alignment:
Q  129 gatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaattttt-----cataataaatatttgctattaat 223  Q
    ||||| ||||||| |||||| |||||| ||||||||| ||||||||| |||||||||||||||| || ||||     |||||||||||||| ||||||||    
T  9625027 gatacccaaaataaaaattatgcattgaaaattgtgtttatttatttttcaagaagttagaaatgaaattttcataacataataaatatttactattaat 9624928  T
Q  224 agaattcttaacat 237  Q
      |||| |||||||    
T  9624927 gaaatttttaacat 9624914  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 39734734 - 39734598
Alignment:
Q  101 taacttgtgctcatagggcacatgttatg-atacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttt 199  Q
    |||||||||| | || ||||||||||| | |||| |||| || ||||||  ||||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  39734734 taacttgtgcccttacggcacatgttaaggatacccaaa-tataaattatacattgaaaattgtgtgcatttatttcgcaagaagttagaaattaatttt 39734636  T
Q  200 tcataataaatatttgctattaatagaattcttaacat 237  Q
    | ||||||||||||| ||||||||| ||||||||||||    
T  39734635 ttataataaatatttactattaataaaattcttaacat 39734598  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 21327965 - 21327896
Alignment:
Q  168 atttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacat 237  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  21327965 atttatttttcaagaagttgaaaattaatttttcataataaatatttactatttacagaattcttaacat 21327896  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 1587026 - 1586940
Alignment:
Q  136 aaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaat 223  Q
    ||||||||||||| | |||| ||||||||  |||||||||||||||||||||  |||||| |||||| |||||||||||| |||||||    
T  1587026 aaaatagaaattatgtattgaaaattgtggctatttatttctcaagaagttaagaattaa-ttttcaaaataaatatttgatattaat 1586940  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 36186571 - 36186508
Alignment:
Q  171 tatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaa 234  Q
    ||||| |||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||    
T  36186571 tatttatcaagaagttaagaattaatttctcataataaatatttgctattaattgaattcttaa 36186508  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 30868327 - 30868264
Alignment:
Q  136 aaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttt 199  Q
    ||||||||||||||  ||||||||||||||  |||||||| |||| |||||| |||||||||||    
T  30868327 aaaatagaaattacatattggaaattgtgtcaatttatttttcaaaaagttaaaaattaatttt 30868264  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 25435796 - 25435639
Alignment:
Q  86 aaatatggaaaatgctaacttgtgctcatagggcacatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagt 185  Q
    ||||| || ||||| |||||||||  | |||||||||||||| | ||   || |||||||||| || ||| |||||||||  |||||||| | | | | |    
T  25435796 aaataagggaaatgttaacttgtgaccttagggcacatgttaaggtatcaaagatagaaattatgcgttgaaaattgtgtcaatttattttttacgcaat 25435697  T
Q  186 tagaaattaatttttcataataaatatttgctattaatagaattcttaacatatgccc 243  Q
    || || ||||| |||| ||||||||||||||| || ||||||  |||||||| |||||    
T  25435696 taaaatttaatgtttcttaataaatatttgctctttatagaaaccttaacatgtgccc 25435639  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 5498485 - 5498542
Alignment:
Q  138 aatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaa 195  Q
    ||||||||||| |||||| ||||||||| | |||||||||  | ||||||||||||||    
T  5498485 aatagaaattatgcattgaaaattgtgtatgtttatttctataaaagttagaaattaa 5498542  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 28038609 - 28038537
Alignment:
Q  168 atttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatatg 240  Q
    |||||||||| || |||||  || ||||||||||  ||||||||||||||||| || |||  |||||||||||    
T  28038609 atttatttcttaaaaagttgaaatttaatttttctcaataaatatttgctatttatggaaaccttaacatatg 28038537  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 33919302 - 33919250
Alignment:
Q  168 atttatttctcaagaagttagaaattaatttttcataataaatatttgctatt 220  Q
    ||||||||||||| |||||| ||||||||||||   |||||||| ||||||||    
T  33919302 atttatttctcaaaaagttaaaaattaattttttgcaataaatacttgctatt 33919250  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 32181992 - 32182092
Alignment:
Q  136 aaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaac 235  Q
    |||||||||| || |||||| |||||||||||||||||||| ||| |||||  |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  32181992 aaaatagaaactatgcattgaaaattgtgtgtatttatttcacaacaagttgaaaattaatttttcagaataaatgtttgctattaatagaattcttaac 32182091  T
Q  236 a 236  Q
    |    
T  32182092 a 32182092  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 39825912 - 39825979
Alignment:
Q  170 ttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacat 237  Q
    ||||||||||||||||||  |||||| |||| ||||||||||||||||||||||  ||||||||||||    
T  39825912 ttatttctcaagaagttaagaattaaatttttataataaatatttgctattaatgaaattcttaacat 39825979  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 18618666 - 18618553
Alignment:
Q  120 acatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctat 219  Q
    |||||||| |||||  |||||||||||  | | ||| ||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18618666 acatgttaagatacctaaaatagaaatatctc-ttgaaaattgtggctatttatttctcaagaagttaagaattaatttttcataataaatatttgctat 18618568  T
Q  220 taatagaattcttaa 234  Q
    |||||||||||||||    
T  18618567 taatagaattcttaa 18618553  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 16560866 - 16560722
Alignment:
Q  95 aaatgctaacttgtgctcatagggcacatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaatta 194  Q
    |||||||||| ||||  | ||||  |||||||| ||||| ||||||| |||||| | |||  ||||||| | |||||||||||||||||| ||  |||||    
T  16560866 aaatgctaacctgtgaccttaggatacatgttaagatacccaaaataaaaattatgtattaaaaattgtctctatttatttctcaagaaggtaagaatta 16560767  T
Q  195 atttttcataataaatatttgctattaatagaattcttaacatat 239  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||    
T  16560766 atttttcataacaaatatttgctattaatggaattcttagcatat 16560722  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 47762867 - 47762735
Alignment:
Q  95 aaatgctaacttgtgctcatagggcacatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaatta 194  Q
    |||||||||||||||| | || |||||||| || ||||| |||||||||||||| |||||||||||| |||          ||||| |||||| ||||||    
T  47762867 aaatgctaacttgtgcccttaaggcacatgctaagatacccaaaatagaaattatgcattggaaattatgt----------ctcaataagttaaaaatta 47762778  T
Q  195 atttttcataataaatatttgctattaatagaattcttaacat 237  Q
    | |||||||||||||||||| |||||||  |||||||||||||    
T  47762777 aattttcataataaatatttcctattaaaggaattcttaacat 47762735  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 3550670 - 3550575
Alignment:
Q  137 aaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaa 234  Q
    ||||| |||||| ||||||||| ||||||  |||||||| |||| |  ||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  3550670 aaatataaattatgcattggaa-ttgtgttaatttatttatcaacat-ttataaattagtttttcataataaatatttgctattaatggaattcttaa 3550575  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 24035275 - 24035193
Alignment:
Q  161 tgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatatgccc 243  Q
    ||||| |||||||||||||| ||||||  ||||||||||||| |||||||||||  |||||||  ||||||||| || |||||    
T  24035275 tgtgtctatttatttctcaaaaagttaagaattaatttttcacaataaatatttattattaatgaaattcttaatatgtgccc 24035193  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 31475229 - 31475372
Alignment:
Q  92 ggaaaatgctaacttgtgctcatagggcacatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaa 191  Q
    |||||||| ||||||||||  | |||| |||||||| ||||| |||||||||||||| | |||| ||||| ||  |||||||||||||| ||||||  ||    
T  31475229 ggaaaatgttaacttgtgc--aaagggtacatgttaagatacccaaaatagaaattatgtattgaaaattatgc-tatttatttctcaa-aagttaagaa 31475324  T
Q  192 ttaatttttc--ataataaatatttgctattaatagaattcttaacat 237  Q
    |||||||||   ||||||||||| || |||||||||||||||||||||    
T  31475325 ttaatttttttaataataaatatatgttattaatagaattcttaacat 31475372  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 9197083 - 9197015
Alignment:
Q  152 attggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctatt 220  Q
    |||||||||||||   |||||||| | ||||||||| ||||||||||||||| ||||||||||| ||||    
T  9197083 attggaaattgtgcccatttattttttaagaagttaaaaattaatttttcatgataaatatttgatatt 9197015  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 52378632 - 52378584
Alignment:
Q  204 aataaatatttgctattaatagaattcttaacatatgcccgacaagtta 252  Q
    |||||||| ||||||||||||||||||||||||| ||||  ||||||||    
T  52378632 aataaataattgctattaatagaattcttaacatgtgccgcacaagtta 52378584  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 12966963 - 12967032
Alignment:
Q  174 ttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatatgccc 243  Q
    ||||||| |||||  ||| |||||||||  |||||||||||||||||  ||||||||||||||| |||||    
T  12966963 ttctcaaaaagttgaaaactaatttttctcaataaatatttgctatttgtagaattcttaacatgtgccc 12967032  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 2588453 - 2588387
Alignment:
Q  171 tatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacat 237  Q
    ||||| |||||||||||  ||||||||||||||| ||||||||| | | ||||  ||||||||||||    
T  2588453 tatttttcaagaagttaagaattaatttttcatagtaaatatttaccactaatgaaattcttaacat 2588387  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 16550209 - 16550293
Alignment:
Q  95 aaatgctaacttgtgctcatagggcacatgttatgatacacaaaatagaaattacgcattggaaattgtgtgtatttatttctca 179  Q
    ||||| |||||||||| | |||||||||||||| | | |  || |||||||||| |||||| |||||||||  ||||||||||||    
T  16550209 aaatgttaacttgtgcccttagggcacatgttaaggttccaaagatagaaattatgcattgtaaattgtgtcaatttatttctca 16550293  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 35319308 - 35319395
Alignment:
Q  155 ggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaacatatgcc 242  Q
    |||||||||||  |||||||  || |||  ||| |||||||| |||  |||||||||||| ||||| ||||||| |||||||||||||    
T  35319308 ggaaattgtgtcaatttattcttctagagattaaaaattaatgttttgtaataaatatttactatttatagaatccttaacatatgcc 35319395  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 23684091 - 23684186
Alignment:
Q  136 aaaatagaaattacgcattggaaattgtgtgtatttatttctcaagaagttagaaattaatttttcataataaatatttgctattaatagaattcttaa 234  Q
    |||||| |||||| | |||  ||||||||  |||||||||||||||   |||  |||| ||||||||||||||||||| | || |||||| ||||||||    
T  23684091 aaaataaaaattatgtattaaaaattgtggctatttatttctcaag---ttaagaattgatttttcataataaatattagttactaataggattcttaa 23684186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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