View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_61 (Length: 258)
Name: NF14289_high_61
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 38398769 - 38398541
Alignment:
| Q |
18 |
atagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaattaatgcattagttttgatattgaatatt |
117 |
Q |
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| T |
38398769 |
atagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaattaatgcattagttttgatattgaatatt |
38398670 |
T |
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| Q |
118 |
ggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttat---tcttgtcgtggatccgcattcgatc |
214 |
Q |
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| T |
38398669 |
ggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttattcttcttgtcgtggatccgcattcgatc |
38398570 |
T |
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| Q |
215 |
ttatagttcatcataaatgcggaaatcgt |
243 |
Q |
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| T |
38398569 |
ttatagttcatcataaatgcggaaatcgt |
38398541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 15010715 - 15010650
Alignment:
| Q |
184 |
tcttattcttgtcgtggatccgc-attcgatcttatagttcatcataaatgcggaaatcgttcttc |
248 |
Q |
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| T |
15010715 |
tcttattcttgtagtggatccgcgattcgatcttatagttcatcttgaatgtggcgatcgttcttc |
15010650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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