View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_63 (Length: 255)

Name: NF14289_high_63
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_63
NF14289_high_63
[»] chr7 (4 HSPs)
chr7 (1-242)||(47872819-47873060)
chr7 (1-73)||(8227517-8227589)
chr7 (24-73)||(23681817-23681866)
chr7 (44-80)||(30018258-30018294)
[»] chr5 (2 HSPs)
chr5 (7-59)||(8073669-8073721)
chr5 (43-79)||(37114601-37114637)
[»] chr6 (2 HSPs)
chr6 (24-87)||(13587625-13587688)
chr6 (37-73)||(2188744-2188780)
[»] chr4 (4 HSPs)
chr4 (1-60)||(21001369-21001428)
chr4 (37-73)||(6122149-6122185)
chr4 (27-87)||(7981621-7981681)
chr4 (39-71)||(29095112-29095144)
[»] chr3 (2 HSPs)
chr3 (24-59)||(40210411-40210446)
chr3 (1-61)||(13774454-13774514)
[»] chr1 (5 HSPs)
chr1 (31-73)||(41625533-41625575)
chr1 (29-73)||(13199080-13199124)
chr1 (36-82)||(7890417-7890463)
chr1 (38-71)||(26120716-26120749)
chr1 (24-60)||(16005058-16005094)
[»] chr8 (2 HSPs)
chr8 (35-71)||(10310489-10310525)
chr8 (24-56)||(24730219-24730251)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 47873060 - 47872819
Alignment:
Q  1 acaaacttattttccactggtgtatcattaaatctcatcatatttcatttaatttaatagtaaaatttattgactcaatagtagaaatacccttgtacag 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47873060 acaaacttattttccactgttgtatcattaaatctcatcatatttcatttaatttaatagtaaaatttattgactcaatagtagaaataaccttgtacag 47872961  T
Q  101 ggtgcaccatagatttggccaaataaacttatacaataggtaaatatatgaaaatttatttattaattttactgaagtaacatatacaacaaacttacta 200  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47872960 ggtgcaccatagatttggccaaataaacttatacgataggtatatatatgaaaatttatttattaattttactgaagtaacatatacaacaaacttacta 47872861  T
Q  201 agaaaaattatgctagtatatctctaacgccatagagaaaac 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47872860 agaaaaattatgctagtatatctctaacgccatagagaaaac 47872819  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8227589 - 8227517
Alignment:
Q  1 acaaacttattttccactggtgtatcattaaatctcatcatatttcatttaatttaatagtaaaatttattga 73  Q
    |||||||||||||||||   |||||| ||||||||||||||||||||||||||| |||| | | |||||||||    
T  8227589 acaaacttattttccaccattgtatcgttaaatctcatcatatttcatttaattaaataatgagatttattga 8227517  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23681866 - 23681817
Alignment:
Q  24 atcattaaatctcatcatatttcatttaatttaatagtaaaatttattga 73  Q
    |||||||||| |||||||||||||||| |||||||| | | |||||||||    
T  23681866 atcattaaatgtcatcatatttcatttgatttaataatgatatttattga 23681817  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 30018294 - 30018258
Alignment:
Q  44 ttcatttaatttaatagtaaaatttattgactcaata 80  Q
    |||||||||||||||  ||||||||||||||||||||    
T  30018294 ttcatttaatttaatgataaaatttattgactcaata 30018258  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 8073721 - 8073669
Alignment:
Q  7 ttattttccactggtgtatcattaaatctcatcatatttcatttaatttaata 59  Q
    |||||||| |||  || ||||||||||||||||||||||||||||||||||||    
T  8073721 ttattttcaactattgaatcattaaatctcatcatatttcatttaatttaata 8073669  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 37114637 - 37114601
Alignment:
Q  43 tttcatttaatttaatagtaaaatttattgactcaat 79  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  37114637 tttcatttactttaatagtaaaatttattgattcaat 37114601  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 13587688 - 13587625
Alignment:
Q  24 atcattaaatctcatcatatttcatttaatttaatagtaaaatttattgactcaatagtagaaa 87  Q
    ||||||||||||| |||||||||||| ||||||||||| | |||||||||  |||| |||||||    
T  13587688 atcattaaatctcgtcatatttcattcaatttaatagtgagatttattgatccaatggtagaaa 13587625  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 2188780 - 2188744
Alignment:
Q  37 atcatatttcatttaatttaatagtaaaatttattga 73  Q
    |||||||||||||||||||||| |||| |||||||||    
T  2188780 atcatatttcatttaatttaattgtaagatttattga 2188744  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21001369 - 21001428
Alignment:
Q  1 acaaacttattttccactggtgtatcattaaatctcatcatatttcatttaatttaatag 60  Q
    |||| ||| |||||||| | || ||||||||||||||||||||| |||||||||||||||    
T  21001369 acaagcttgttttccaccgttggatcattaaatctcatcatattacatttaatttaatag 21001428  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 6122185 - 6122149
Alignment:
Q  37 atcatatttcatttaatttaatagtaaaatttattga 73  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6122185 atcatatttcatttaatttaatggtaaaatttattga 6122149  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 7981681 - 7981621
Alignment:
Q  27 attaaatctcatcatatttcatttaatttaatagtaaaatttattgactcaatagtagaaa 87  Q
    |||||||||||| ||||||| |||| ||| ||||| ||| ||||| | |||||||||||||    
T  7981681 attaaatctcattatatttcttttatttttatagtgaaaattatttattcaatagtagaaa 7981621  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 29095144 - 29095112
Alignment:
Q  39 catatttcatttaatttaatagtaaaatttatt 71  Q
    |||||||||||||||||||| ||||||||||||    
T  29095144 catatttcatttaatttaatggtaaaatttatt 29095112  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 40210411 - 40210446
Alignment:
Q  24 atcattaaatctcatcatatttcatttaatttaata 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  40210411 atcattaaatctcatcatatttcatttaatttaata 40210446  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13774454 - 13774514
Alignment:
Q  1 acaaacttattttccactggtgtatcattaaatctcatcatatttcatttaatttaatagt 61  Q
    |||| |||||||||||||  || || ||| ||||||| |||||||||||||||||||||||    
T  13774454 acaagcttattttccactattggataatttaatctcaccatatttcatttaatttaatagt 13774514  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 41625575 - 41625533
Alignment:
Q  31 aatctcatcatatttcatttaatttaatagtaaaatttattga 73  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  41625575 aatctcatcatattttatttaatttaatagtgaaatttattga 41625533  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 13199080 - 13199124
Alignment:
Q  29 taaatctcatcatatttcatttaatttaatagtaaaatttattga 73  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||    
T  13199080 taaatatcatcatatttaatttaatttaataataaaatttattga 13199124  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 7890463 - 7890417
Alignment:
Q  36 catcatatttcatttaatttaatagtaaaatttattgactcaatagt 82  Q
    ||||||||||||||||||||||| || |||||||||||  |||||||    
T  7890463 catcatatttcatttaatttaatggtgaaatttattgatccaatagt 7890417  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 26120716 - 26120749
Alignment:
Q  38 tcatatttcatttaatttaatagtaaaatttatt 71  Q
    ||||||||||||||||||||||||||| ||||||    
T  26120716 tcatatttcatttaatttaatagtaaactttatt 26120749  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 16005058 - 16005094
Alignment:
Q  24 atcattaaatctcatcatatttcatttaatttaatag 60  Q
    |||||||||||||||||||||| |||| |||||||||    
T  16005058 atcattaaatctcatcatattttattttatttaatag 16005094  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 10310489 - 10310525
Alignment:
Q  35 tcatcatatttcatttaatttaatagtaaaatttatt 71  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  10310489 tcatcatatttcatttaatttaattgtagaatttatt 10310525  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 24730219 - 24730251
Alignment:
Q  24 atcattaaatctcatcatatttcatttaattta 56  Q
    |||||||||||||||||||||| ||||||||||    
T  24730219 atcattaaatctcatcatattttatttaattta 24730251  T

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