View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14289_high_7 (Length: 631)
Name: NF14289_high_7
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_7 |
 | |
|
| [»] scaffold0542 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0542 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 248 - 612
Target Start/End: Original strand, 7092 - 7456
Alignment:
| Q |
248 |
tcatcttaagtgatcatattaaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaacaa |
347 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7092 |
tcatcttaagtgatcatattcaagtgctcacaaaaccactagaatatatgataaaggaagcgctctctatactaaatcaaaattttgttgcttacaacaa |
7191 |
T |
|
| Q |
348 |
cttaattagtcaaagt---ttcctcattggttaaggttgatgaagatgttgttgaagttgattcacctccacaagtgcaataaggtaaagaagtagtgat |
444 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7192 |
cttaattagtcaatgtaatttcctcattggttaaggttgatgaagatgttgttgaagttgattcacctccacaagtgcaataaggtaaagaagtagtgat |
7291 |
T |
|
| Q |
445 |
aataattggtttggctatgtaagtaggtttatcttctccagccataatcacaagtacttctgggtcagaattaatcttctctatgttcttggacattacc |
544 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7292 |
aataattggtttggctatgtaagttggtttatcttctccagccataatcacaagtacttctggctcagaattaatcttctctatgttcttggacattacc |
7391 |
T |
|
| Q |
545 |
tgtttcatttcttcatctgaatttgatgatgattgagaagaagaaccacgttttttgtaggagcatac |
612 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7392 |
tgtttcatttcttcatctgaatt---tgatgattgagaagaagaaccacgttttttgtaggagcatac |
7456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 6854 - 7020
Alignment:
| Q |
13 |
aatatatctttagctatatttgattaaccacttaagtcaaatcacttagaaattaattactatagtgattaatttgcataactaaatatattaacatcct |
112 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6854 |
aatatttctttagctatatttcattaatcacctaagtcaaatcacttaaaaattaattactatagtgattaatttgcataactaaatatattaacatcct |
6953 |
T |
|
| Q |
113 |
caaacttcattaaacaggaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
179 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954 |
caaacttcattaaacaagaaccaacaaacatggttagtagcaaagtaagtcgccatcccttcattat |
7020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University