View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14289_high_70 (Length: 244)
Name: NF14289_high_70
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14289_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5468534 - 5468762
Alignment:
| Q |
1 |
caaagttgttgtaggagaggtctaacaagcgtaggcttgaagcattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5468534 |
caaagttgttgtaggagaggtctaacaagcgtaggcttgaagaattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatat |
5468633 |
T |
|
| Q |
101 |
atttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaagcatactttggaatgaaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5468634 |
atttatggaagggagatagtttccgatgtctggtggtacgatagagctcaacttgttgctggagtagcccaaataaaaagcatactttggaatgaaagaa |
5468733 |
T |
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| Q |
201 |
ataggcccttgcaacttgttaaaactaag |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
5468734 |
ataggcccttgcaacttgttaaaactaag |
5468762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5412250 - 5412022
Alignment:
| Q |
1 |
caaagttgttgtaggagaggtctaacaagcgtaggcttgaagcattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatat |
100 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||| || ||||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
5412250 |
caaagttgttgtaggagagatccaacaagcgtaggcttgaagcattacacaaggactcgtctatttctcccttaaaactattgtttgaaagaaacaatat |
5412151 |
T |
|
| Q |
101 |
atttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaagcatactttggaatgaaagaa |
200 |
Q |
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| T |
5412150 |
atttattgcagggagatagtttccgatgtctgggtgtatgatagagctcaacttgttgcttgagtagtccaaataaaaagcatactttggaatgaaagaa |
5412051 |
T |
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| Q |
201 |
ataggcccttgcaacttgttaaaactaag |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
5412050 |
ataggcccttgcaacttgttaaaactaag |
5412022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5392801 - 5392573
Alignment:
| Q |
1 |
caaagttgttgtaggagaggtctaacaagcgtaggcttgaagcattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatat |
100 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
5392801 |
caaagttgttgtaggagagatctaacaagcgtaggtatgaagcattgcacaaggactcgtctatttctcccttaaaactattgtttgaaagaaacaatat |
5392702 |
T |
|
| Q |
101 |
atttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaagcatactttggaatgaaagaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||| |||| |||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
5392701 |
atttatggcagggagatagtttccgatgtctggttgtacaatagagctcaacttattgcttgagtagtccaaataaaaagcatgctttggaatgaaggaa |
5392602 |
T |
|
| Q |
201 |
ataggcccttgcaacttgttaaaactaag |
229 |
Q |
| |
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||||||||||||||| |||||||||||| |
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| T |
5392601 |
ataggcccttgcaaccggttaaaactaag |
5392573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5502004 - 5501794
Alignment:
| Q |
1 |
caaagttgttgtaggagaggtctaacaagcgtaggcttgaagcattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatat |
100 |
Q |
| |
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|||||||||||||||| || |||| ||| | || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5502004 |
caaagttgttgtaggaaagatctagcaatagaagacttgaagcattgcaaaaggattcatgaatttctcccttaaaactattgtttgaaagaaacaatac |
5501905 |
T |
|
| Q |
101 |
atttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaagcatactttggaatgaaagaa |
200 |
Q |
| |
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| |||| |||||||||| ||||| || |||||||||| ||| ||| ||||| ||||||||||||||||||| ||| |||||||| || ||||| ||| |
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| T |
5501904 |
acgtatgaaagggagataatttccaatatctggtggtaagattgagctcaacatgttgctggagtagtccaagtaacttgcatacttcgggatgaatgaa |
5501805 |
T |
|
| Q |
201 |
ataggcccttg |
211 |
Q |
| |
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|| |||||||| |
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| T |
5501804 |
attggcccttg |
5501794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 5347003 - 5347151
Alignment:
| Q |
81 |
ttgtttgaaagaaacaatatatttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaag |
180 |
Q |
| |
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||||||||||||||||| | | ||||| ||||||| | ||| || |||||||| || | ||||||| | || |||||||| || |||||||||||| | |
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| T |
5347003 |
ttgtttgaaagaaacaaaaaaattatgtaagggaggtggttcccaatgtctggcggaatgatagagctgaatttgttgcttgaatagtccaaataagttg |
5347102 |
T |
|
| Q |
181 |
catactttggaatgaaagaaataggcccttgcaacttgttaaaactaag |
229 |
Q |
| |
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| |||||||||| |||||||| |||||||| | ||||||| |||||| |
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| T |
5347103 |
cgtactttggaactaaagaaattggcccttggaggttgttaacactaag |
5347151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 5362944 - 5362850
Alignment:
| Q |
42 |
gcattgcaaaaggatccatcaatttctcccttaaaactattgtttgaaagaaacaatatatttatggaagggagatagtttccgatgtctggtgg |
136 |
Q |
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|||||||| || ||| ||| |||| ||||| |||||| ||||||||||||||||| ||| |||| ||||||||| |||||| ||||||||||| |
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| T |
5362944 |
gcattgcagaaagattcatggatttttccctgaaaactgttgtttgaaagaaacaaaataagtatgtaagggagatggtttccaatgtctggtgg |
5362850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 5401073 - 5400929
Alignment:
| Q |
85 |
ttgaaagaaacaatatatttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaagcata |
184 |
Q |
| |
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||||||||||||| | | ||||| ||||||| | ||| || ||||||||||| | ||||||| | || || ||||| || |||||||||||| || || |
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| T |
5401073 |
ttgaaagaaacaagaaaattatgtaagggaggtggttcccaatgtctggtggaatgatagagctgaatttattgcttgaatagtccaaataagttgcgta |
5400974 |
T |
|
| Q |
185 |
ctttggaatgaaagaaataggcccttgcaacttgttaaaactaag |
229 |
Q |
| |
|
||||| || |||||||| |||||||| | |||||||||||||| |
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| T |
5400973 |
ctttgaaactaaagaaattggcccttggaggttgttaaaactaag |
5400929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Original strand, 5424323 - 5424453
Alignment:
| Q |
81 |
ttgtttgaaagaaacaatatatttatggaagggagatagtttccgatgtctggtggtacgatagagttcaacttgttgctggagtagtccaaataaaaag |
180 |
Q |
| |
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|||||||||||||||| | | | ||| ||||||| | ||| || ||||||||||| | ||||||| | || |||||||| || |||||||||||| | |
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| T |
5424323 |
ttgtttgaaagaaacataaaagtcatgtaagggaggtggttcccaatgtctggtggaatgatagagctgaagttgttgcttgaatagtccaaataagcgg |
5424422 |
T |
|
| Q |
181 |
catactttggaatgaaagaaataggcccttg |
211 |
Q |
| |
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| |||||||||| |||| ||| |||||||| |
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| T |
5424423 |
cgtactttggaactaaaggaattggcccttg |
5424453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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