View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14289_high_71 (Length: 240)

Name: NF14289_high_71
Description: NF14289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14289_high_71
NF14289_high_71
[»] chr6 (2 HSPs)
chr6 (109-240)||(10856909-10857041)
chr6 (13-112)||(10855996-10856106)
[»] chr3 (4 HSPs)
chr3 (168-240)||(39426179-39426252)
chr3 (168-240)||(39426877-39426950)
chr3 (64-166)||(37461517-37461620)
chr3 (13-45)||(48574375-48574407)
[»] chr2 (20 HSPs)
chr2 (66-166)||(10340567-10340667)
chr2 (64-166)||(8574425-8574528)
chr2 (66-153)||(10370959-10371046)
chr2 (66-148)||(10334862-10334944)
chr2 (168-240)||(8581138-8581210)
chr2 (66-166)||(10351286-10351386)
chr2 (68-166)||(9318669-9318768)
chr2 (90-153)||(10346832-10346895)
chr2 (64-149)||(9287731-9287816)
chr2 (107-166)||(9069057-9069117)
chr2 (80-166)||(9076633-9076719)
chr2 (106-149)||(9271846-9271889)
chr2 (68-166)||(9315191-9315290)
chr2 (68-166)||(9326533-9326632)
chr2 (163-229)||(9271715-9271781)
chr2 (64-142)||(11425347-11425424)
chr2 (106-166)||(9273175-9273236)
chr2 (203-240)||(10334687-10334724)
chr2 (203-240)||(10346693-10346730)
chr2 (89-145)||(9291102-9291158)
[»] chr4 (2 HSPs)
chr4 (66-166)||(26574087-26574179)
chr4 (203-240)||(26573953-26573990)
[»] chr5 (1 HSPs)
chr5 (168-233)||(36223707-36223773)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 10856909 - 10857041
Alignment:
Q  109 ttagtcaccttggtttgtggg-ataggttgaattgataatgatggagctgaacccatttatagtggaactgataaaagctattttggctgcaaagatttt 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10856909 ttagtcaccttggtttgtggggataggttgaattgataatgatggagctgaacccatttatagtggaactgataaaagctattttggctgcaaagatttt 10857008  T
Q  208 ggcataggcatgtgaagcatgagcatcatatca 240  Q
    ||||||||||||| |||||||||||||||||||    
T  10857009 ggcataggcatgtaaagcatgagcatcatatca 10857041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 10855996 - 10856106
Alignment:
Q  13 tgaaagtagaaaatgttcactttagtccttgaa---------taaatctct--ttttctgatatgtgcagctaaaacaggatgcttgagttgtttcttcc 101  Q
    |||||||||||||||||||||||||||||||||         |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10855996 tgaaagtagaaaatgttcactttagtccttgaaccataaatttaaatctctatttttctgatatgtgcagctaaaacaggatgcttgagttgtttcttcc 10856095  T
Q  102 gatagaattag 112  Q
    ||| |||||||    
T  10856096 gatggaattag 10856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 39426252 - 39426179
Alignment:
Q  168 tagtggaactgataaaagctattttggctgcaaagatttt-ggcataggcatgtgaagcatgagcatcatatca 240  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39426252 tagtagaaatgataaaagctattttggctgcaaagatttttggcataggcatgtgaagcatgagcatcatatca 39426179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 39426950 - 39426877
Alignment:
Q  168 tagtggaactgataaaagctattttggctgcaaaga-ttttggcataggcatgtgaagcatgagcatcatatca 240  Q
    |||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  39426950 tagtagaaatgataaaagctattttggctgcaaagatttttgacataggcatgtgaagcttgagcatcatatca 39426877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 37461620 - 37461517
Alignment:
Q  64 atgtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaaccc 162  Q
    |||||||||| ||||||| ||||  |||||||||||  ||| ||||||||| ||||||||||||||  ||||||||||||||||| ||||||||| || |    
T  37461620 atgtgcagctgaaacagggtgctcaagttgtttcttgtgatggaattagtctccttggtttgtgggtaaggttgaattgataatgaatggagctgcacgc 37461521  T
Q  163 attt 166  Q
    ||||    
T  37461520 attt 37461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 48574407 - 48574375
Alignment:
Q  13 tgaaagtagaaaatgttcactttagtccttgaa 45  Q
    ||||||||||||||| |||||||||||||||||    
T  48574407 tgaaagtagaaaatggtcactttagtccttgaa 48574375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 10340667 - 10340567
Alignment:
Q  66 gtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatgatggagctgaacccatt 165  Q
    |||||||| ||||||||||||  |||||||||||  ||| ||||||||||||| ||| ||||| | ||||||||||||||||||||||| || |||||||    
T  10340667 gtgcagctgaaacaggatgctccagttgtttcttatgatggaattagtcacctcggtatgtggtaaaggttgaattgataatgatggagttgcacccatt 10340568  T
Q  166 t 166  Q
    |    
T  10340567 t 10340567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 8574425 - 8574528
Alignment:
Q  64 atgtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaaccc 162  Q
    |||||||||| ||||||||||||  |||||||||||  ||| ||||||||||||||||||||||| | |||||||||| | |||| ||||||||| ||||    
T  8574425 atgtgcagctgaaacaggatgctcaagttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaatttacaatgaatggagctgcaccc 8574524  T
Q  163 attt 166  Q
    ||||    
T  8574525 attt 8574528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 10371046 - 10370959
Alignment:
Q  66 gtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatgatgga 153  Q
    |||||||| ||||||||||||  |||||||||||  ||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  10371046 gtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaattgataatgttgga 10370959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 10334944 - 10334862
Alignment:
Q  66 gtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg 148  Q
    |||||||| ||||||||||||  |||||||||||  ||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  10334944 gtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggtttgtaggaaaggttgaattgataatg 10334862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 8581138 - 8581210
Alignment:
Q  168 tagtggaactgataaaagctattttggctgcaaagattttggcataggcatgtgaagcatgagcatcatatca 240  Q
    |||| ||| |||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||    
T  8581138 tagtagaaatgataaaagctattttggctacaaagattttggctttggtatgtgaagcatgagcatcatatca 8581210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 10351386 - 10351286
Alignment:
Q  66 gtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatgatggagctgaacccatt 165  Q
    |||||||| ||| |||||||||  ||||||||||  ||| |||||  |||||||||||||| ||| ||||||||||||||||||||||| || |||||||    
T  10351386 gtgcagctgaaataggatgcttctgttgtttcttgtgatggaattgctcaccttggtttgtaggaaaggttgaattgataatgatggagttgcacccatt 10351287  T
Q  166 t 166  Q
    |    
T  10351286 t 10351286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 9318768 - 9318669
Alignment:
Q  68 gcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||  |||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||    
T  9318768 gcagctgaaacaggatactcaagttgtttcttgtgatggaattagaaaccttggtttgtgggaaaggctgaattgataatgaatggagctgcacccattt 9318669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 10346895 - 10346832
Alignment:
Q  90 gttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatgatgga 153  Q
    ||||||||||  ||| ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  10346895 gttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaattgataatgatgga 10346832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 9287816 - 9287731
Alignment:
Q  64 atgtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatga 149  Q
    |||||||||| ||||||||||||  |||||||||||  ||| || ||||||||||||  |||||||| ||| ||||||||||||||    
T  9287816 atgtgcagctgaaacaggatgctcaagttgtttcttgtgatggagttagtcaccttgtcttgtgggaaaggctgaattgataatga 9287731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 9069057 - 9069117
Alignment:
Q  107 aattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||    
T  9069057 aattagtcaccttggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattt 9069117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 9076633 - 9076719
Alignment:
Q  80 ggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    ||||||| ||||||||||||  |||  |||||||||||||||||||  ||| ||||||||||||||||| ||||| ||| ||||||||    
T  9076633 ggatgctagagttgtttcttt-gatgtaattagtcaccttggtttgcaggaaaggttgaattgataatgaatggaactgcacccattt 9076719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 9271889 - 9271846
Alignment:
Q  106 gaattagtcaccttggtttgtgggataggttgaattgataatga 149  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  9271889 gaattagtctccttggtttgtgggaaaggttgaattgataatga 9271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 9315290 - 9315191
Alignment:
Q  68 gcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    |||||| ||||| ||||||  | |||||||||  ||| |||||||||  ||||||||||||||  |||||||||||||||| ||||||||| || |||||    
T  9315290 gcagctgaaacatgatgctcaacttgtttcttgtgatggaattagtctgcttggtttgtgggaatggttgaattgataatgaatggagctgcactcattt 9315191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 9326632 - 9326533
Alignment:
Q  68 gcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    |||||| | ||||||| ||  |||||||||||  ||| |||||||||  ||||||||||| |||||||||||| ||||||| ||||||||| || |||||    
T  9326632 gcagctgatacaggatactcaagttgtttcttgtgatggaattagtctgcttggtttgtgcgataggttgaatggataatgaatggagctgcactcattt 9326533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 9271781 - 9271715
Alignment:
Q  163 atttatagtggaactgataaaagctattttggctgcaaagattttggcataggcatgtgaagcatga 229  Q
    |||| |||||||| ||||||| |||||| | || | |||||||||||||| ||||||||||||||||    
T  9271781 atttttagtggaattgataaacgctattatagccgtaaagattttggcatcggcatgtgaagcatga 9271715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 11425347 - 11425424
Alignment:
Q  64 atgtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattg 142  Q
    |||||||||| ||||||||| || ||||||||||||  ||  |||||| ||||||||||||| |||| || ||||||||    
T  11425347 atgtgcagctgaaacaggatactcgagttgtttcttgtgaaggaattaatcaccttggtttg-gggaaagtttgaattg 11425424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 9273236 - 9273175
Alignment:
Q  106 gaattagtcaccttggtttgtgggataggttgaattgataatg-atggagctgaacccattt 166  Q
    ||||||||| |||||||||| | || ||||||||||||||||| ||||||||| | ||||||    
T  9273236 gaattagtctccttggtttgcgagaaaggttgaattgataatgaatggagctgcatccattt 9273175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 10334724 - 10334687
Alignment:
Q  203 attttggcataggcatgtgaagcatgagcatcatatca 240  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  10334724 attttggtataggcatgcgaagcatgagcatcatatca 10334687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 10346730 - 10346693
Alignment:
Q  203 attttggcataggcatgtgaagcatgagcatcatatca 240  Q
    ||||| || |||||||||||||||||||||||||||||    
T  10346730 atttttgcttaggcatgtgaagcatgagcatcatatca 10346693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 9291158 - 9291102
Alignment:
Q  89 agttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgata 145  Q
    |||||||| ||  ||| |||||||| |||||||||||||||  ||||||||||||||    
T  9291158 agttgtttgttgtgatggaattagttaccttggtttgtggggaaggttgaattgata 9291102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 26574179 - 26574087
Alignment:
Q  66 gtgcagctaaaacaggatgcttgagttgtttcttccgatagaattagtcaccttggtttgtgggataggttgaattgataatgatggagctgaacccatt 165  Q
    |||||||| ||||||||||||  |||||||||||  ||| |||||||||||||||||        |||||||||||| ||||||||||| || |||||||    
T  26574179 gtgcagctgaaacaggatgctccagttgtttcttgtgatggaattagtcaccttggt--------taggttgaattggtaatgatggaggtgcacccatt 26574088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 26573990 - 26573953
Alignment:
Q  203 attttggcataggcatgtgaagcatgagcatcatatca 240  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  26573990 attttggcataggcatgtgaagcttgagcatcatatca 26573953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 36223773 - 36223707
Alignment:
Q  168 tagtggaactgataaaagctattttggctgcaaagatttt-ggcataggcatgtgaagcatgagcat 233  Q
    |||| ||| |||| |||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||||    
T  36223773 tagtagaaatgatgaaagctattttggccgcaaacatttttggcttaggcatgttaagcatgagcat 36223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University